Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total1540
intra-residue [i = j]324
sequential [| i - j | = 1]413
medium range [1 < | i - j | < 5]321
long range [| i - j | ≥ 5]482
NOE constraints per restrained residue b19.7
Dihedral-angle constraints:231
Total number of restricting constraints b1771
Total number of restricting constraints per restrained residue b22.7
Restricting long-range constraints per restrained residue b6.2
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å19.9
0.2 - 0.5 Å38.9
> 0.5 Å49.05
RMS of distance violation / constraint0.68 Å
Maximum distance violation d8.90 Å
Dihedral angle violations / structure
1 - 10 °6.9
> 10 °12.9
RMS of dihedral angle violation / constraint13.57 °
Maximum dihedral angle violation d139.50 °
RPF scores
RecallPrecisionF-measureDP-score
0.9410.9210.9310.768
RMSD Values
allorderedeSelectedf
All backbone atoms1.6 Å0.9 Å0.9 Å
All heavy atoms1.9 Å1.2 Å1.2 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.15N/A-0.28
Procheck G-factor e (all dihedral angles)0.08N/A0.47
Verify3D0.410.0244-0.80
ProsaII (-ve)0.660.06670.04
MolProbity clashscore13.523.1460-0.79
General linear model RMSD prediction1.18
Ramachandran Plot Summary from Procheck f
Most favoured regions93.5%
Additionally allowed regions6.5%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions98%
Allowed regions2%
Disallowed regions0%


a Analysed for residues 1 to 78
b There are 78 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 3A-7A,13A-35A,38A-55A,58A-74A
f Residues selected based on: User defined residues

Selected residue ranges: 3A-7A,13A-34A,38A-55A,58A-74A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4