PyMOL>load ./XCR50_NMR_em_bcr3.pdb.iupac
HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   09-OCT-04   1XPV
TITLE     SOLUTION STRUCTURE OF NORTHEAST STRUCTURAL GENOMICS TARGET
TITLE    2 PROTEIN XCR50 FROM X. CAMPESTRIS
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: HYPOTHETICAL PROTEIN XCC2852;
COMPND   3 CHAIN: A;
COMPND   4 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./XCR50_NMR_em_bcr3.pdb.iupac" loaded as "XCR50_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 1194 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color3, [0, 255, 178]
 Color: "color3" defined as [ 0.000, 1.000, 0.698 ].
PyMOL>color color3, resi 3
 Executive: Colored 19 atoms.
PyMOL>set_color color4, [0, 125, 255]
 Color: "color4" defined as [ 0.000, 0.490, 1.000 ].
PyMOL>color color4, resi 4
 Executive: Colored 14 atoms.
PyMOL>set_color color5, [0, 135, 255]
 Color: "color5" defined as [ 0.000, 0.529, 1.000 ].
PyMOL>color color5, resi 5
 Executive: Colored 19 atoms.
PyMOL>set_color color6, [0, 146, 255]
 Color: "color6" defined as [ 0.000, 0.573, 1.000 ].
PyMOL>color color6, resi 6
 Executive: Colored 21 atoms.
PyMOL>set_color color7, [0, 77, 255]
 Color: "color7" defined as [ 0.000, 0.302, 1.000 ].
PyMOL>color color7, resi 7
 Executive: Colored 17 atoms.
PyMOL>set_color color8, [0, 134, 255]
 Color: "color8" defined as [ 0.000, 0.525, 1.000 ].
PyMOL>color color8, resi 8
 Executive: Colored 24 atoms.
PyMOL>set_color color13, [255, 0, 0]
 Color: "color13" defined as [ 1.000, 0.000, 0.000 ].
PyMOL>color color13, resi 13
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 13
PyMOL>set_color color17, [0, 55, 255]
 Color: "color17" defined as [ 0.000, 0.216, 1.000 ].
PyMOL>color color17, resi 17
 Executive: Colored 10 atoms.
PyMOL>set_color color29, [0, 255, 86]
 Color: "color29" defined as [ 0.000, 1.000, 0.337 ].
PyMOL>color color29, resi 29
 Executive: Colored 20 atoms.
PyMOL>set_color color32, [0, 255, 230]
 Color: "color32" defined as [ 0.000, 1.000, 0.902 ].
PyMOL>color color32, resi 32
 Executive: Colored 16 atoms.
PyMOL>set_color color33, [0, 11, 255]
 Color: "color33" defined as [ 0.000, 0.043, 1.000 ].
PyMOL>color color33, resi 33
 Executive: Colored 20 atoms.
PyMOL>set_color color34, [0, 167, 255]
 Color: "color34" defined as [ 0.000, 0.655, 1.000 ].
PyMOL>color color34, resi 34
 Executive: Colored 19 atoms.
PyMOL>set_color color40, [255, 214, 0]
 Color: "color40" defined as [ 1.000, 0.839, 0.000 ].
PyMOL>color color40, resi 40
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 40
PyMOL>set_color color41, [0, 41, 255]
 Color: "color41" defined as [ 0.000, 0.161, 1.000 ].
PyMOL>color color41, resi 41
 Executive: Colored 15 atoms.
PyMOL>set_color color43, [132, 255, 0]
 Color: "color43" defined as [ 0.518, 1.000, 0.000 ].
PyMOL>color color43, resi 43
 Executive: Colored 10 atoms.
PyMOL>set_color color44, [33, 255, 0]
 Color: "color44" defined as [ 0.129, 1.000, 0.000 ].
PyMOL>color color44, resi 44
 Executive: Colored 21 atoms.
PyMOL>set_color color47, [0, 205, 255]
 Color: "color47" defined as [ 0.000, 0.804, 1.000 ].
PyMOL>color color47, resi 47
 Executive: Colored 24 atoms.
PyMOL>set_color color48, [255, 28, 0]
 Color: "color48" defined as [ 1.000, 0.110, 0.000 ].
PyMOL>color color48, resi 48
 Executive: Colored 16 atoms.
PyMOL>show sticks, res 48
PyMOL>set_color color49, [255, 0, 0]
 Color: "color49" defined as [ 1.000, 0.000, 0.000 ].
PyMOL>color color49, resi 49
 Executive: Colored 14 atoms.
PyMOL>show sticks, res 49
PyMOL>set_color color50, [0, 59, 255]
 Color: "color50" defined as [ 0.000, 0.231, 1.000 ].
PyMOL>color color50, resi 50
 Executive: Colored 16 atoms.
PyMOL>set_color color51, [0, 255, 82]
 Color: "color51" defined as [ 0.000, 1.000, 0.322 ].
PyMOL>color color51, resi 51
 Executive: Colored 19 atoms.
PyMOL>set_color color52, [0, 63, 255]
 Color: "color52" defined as [ 0.000, 0.247, 1.000 ].
PyMOL>color color52, resi 52
 Executive: Colored 24 atoms.
PyMOL>set_color color54, [0, 122, 255]
 Color: "color54" defined as [ 0.000, 0.478, 1.000 ].
PyMOL>color color54, resi 54
 Executive: Colored 14 atoms.
PyMOL>set_color color59, [0, 255, 39]
 Color: "color59" defined as [ 0.000, 1.000, 0.153 ].
PyMOL>color color59, resi 59
 Executive: Colored 19 atoms.
PyMOL>set_color color60, [255, 245, 0]
 Color: "color60" defined as [ 1.000, 0.961, 0.000 ].
PyMOL>color color60, resi 60
 Executive: Colored 12 atoms.
PyMOL>show sticks, res 60
PyMOL>set_color color61, [255, 226, 0]
 Color: "color61" defined as [ 1.000, 0.886, 0.000 ].
PyMOL>color color61, resi 61
 Executive: Colored 24 atoms.
PyMOL>show sticks, res 61
PyMOL>set_color color62, [255, 239, 0]
 Color: "color62" defined as [ 1.000, 0.937, 0.000 ].
PyMOL>color color62, resi 62
 Executive: Colored 14 atoms.
PyMOL>show sticks, res 62
PyMOL>set_color color63, [255, 214, 0]
 Color: "color63" defined as [ 1.000, 0.839, 0.000 ].
PyMOL>color color63, resi 63
 Executive: Colored 20 atoms.
PyMOL>show sticks, res 63
PyMOL>set_color color68, [231, 255, 0]
 Color: "color68" defined as [ 0.906, 1.000, 0.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 19 atoms.
PyMOL>set_color color71, [255, 124, 0]
 Color: "color71" defined as [ 1.000, 0.486, 0.000 ].
PyMOL>color color71, resi 71
 Executive: Colored 24 atoms.
PyMOL>show sticks, res 71
PyMOL>set_color color72, [182, 255, 0]
 Color: "color72" defined as [ 0.714, 1.000, 0.000 ].
PyMOL>color color72, resi 72
 Executive: Colored 19 atoms.
PyMOL>set_color color74, [184, 255, 0]
 Color: "color74" defined as [ 0.722, 1.000, 0.000 ].
PyMOL>color color74, resi 74
 Executive: Colored 10 atoms.
PyMOL>label 13/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 40/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 48/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 49/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 60/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 61/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 62/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 63/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 71/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.84 sec. = 4272.5 frames/hour (0.84 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit