PyMOL>load ./UUR17A_XRay_em_bcr3.pdb HEADER LIPID BINDING PROTEIN 08-OCT-09 3K63 TITLE X-RAY STRUCTURE OF THE PF04200 DOMAIN FROM Q9PRA0_UREPA TITLE 2 PROTEIN OF UREAPLASMA PARVUM. NESG TARGET UUR17A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL MEMBRANE LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIPOPROTEIN_17 DOMAIN; COMPND 5 ENGINEERED: YES ObjectMolecule: Read secondary structure assignments. ObjectMolecule: Read crystal symmetry information. Symmetry: Found 6 symmetry operators. CmdLoad: "./UUR17A_XRay_em_bcr3.pdb" loaded as "UUR17A_XRay_em_bcr3". PyMOL>select selres,all Selector: selection "selres" defined with 985 atoms. PyMOL>hide everything, all PyMOL>dss PyMOL>set stick_transparency,0.6 Setting: stick_transparency set to 0.60000. PyMOL>set cartoon_transparency,0.5 Setting: cartoon_transparency set to 0.50000. PyMOL>show cartoon, selres PyMOL>set bg_rgb, [1,1,1] Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ]. PyMOL>color blue, all Executive: Colored 985 atoms and 1 object. PyMOL>set label_color,black Setting: label_color set to black. PyMOL>set label_font_id, 4 Setting: label_font_id set to 4. PyMOL>set label_size,3 Setting: label_size set to 3.00000. PyMOL>set_color color133, [0,255,0] Color: "color133" defined as [ 0.000, 1.000, 0.000 ]. PyMOL>color color133, resi 133 Executive: Colored 9 atoms. PyMOL>set_color color134, [0,0,255] Color: "color134" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color134, resi 134 Executive: Colored 8 atoms. PyMOL>set_color color135, [0,0,255] Color: "color135" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color135, resi 135 Executive: Colored 11 atoms. PyMOL>set_color color136, [0,255,0] Color: "color136" defined as [ 0.000, 1.000, 0.000 ]. PyMOL>color color136, resi 136 Executive: Colored 9 atoms. PyMOL>set_color color137, [0,0,255] Color: "color137" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color137, resi 137 Executive: Colored 9 atoms. PyMOL>set_color color138, [0,0,255] Color: "color138" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color138, resi 138 Executive: Colored 8 atoms. PyMOL>set_color color139, [0,0,255] Color: "color139" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color139, resi 139 Executive: Colored 7 atoms. PyMOL>set_color color140, [0,0,255] Color: "color140" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color140, resi 140 Executive: Colored 8 atoms. PyMOL>set_color color141, [0,0,255] Color: "color141" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color141, resi 141 Executive: Colored 8 atoms. PyMOL>set_color color142, [0,0,255] Color: "color142" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color142, resi 142 Executive: Colored 8 atoms. PyMOL>set_color color143, [0,0,255] Color: "color143" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color143, resi 143 Executive: Colored 11 atoms. PyMOL>set_color color144, [0,0,255] Color: "color144" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color144, resi 144 Executive: Colored 8 atoms. PyMOL>set_color color145, [0,255,0] Color: "color145" defined as [ 0.000, 1.000, 0.000 ]. PyMOL>color color145, resi 145 Executive: Colored 9 atoms. PyMOL>set_color color146, [0,255,0] Color: "color146" defined as [ 0.000, 1.000, 0.000 ]. PyMOL>color color146, resi 146 Executive: Colored 8 atoms. PyMOL>set_color color147, [0,0,255] Color: "color147" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color147, resi 147 Executive: Colored 7 atoms. PyMOL>set_color color148, [0,0,255] Color: "color148" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color148, resi 148 Executive: Colored 11 atoms. PyMOL>set_color color149, [0,0,255] Color: "color149" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color149, resi 149 Executive: Colored 8 atoms. PyMOL>set_color color150, [0,0,255] Color: "color150" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color150, resi 150 Executive: Colored 11 atoms. PyMOL>set_color color151, [0,0,255] Color: "color151" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color151, resi 151 Executive: Colored 9 atoms. PyMOL>set_color color152, [0,0,255] Color: "color152" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color152, resi 152 Executive: Colored 8 atoms. PyMOL>set_color color153, [0,0,255] Color: "color153" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color153, resi 153 Executive: Colored 5 atoms. PyMOL>set_color color154, [0,0,255] Color: "color154" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color154, resi 154 Executive: Colored 5 atoms. PyMOL>set_color color155, [0,0,255] Color: "color155" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color155, resi 155 Executive: Colored 11 atoms. PyMOL>set_color color156, [0,0,255] Color: "color156" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color156, resi 156 Executive: Colored 7 atoms. PyMOL>set_color color157, [0,0,255] Color: "color157" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color157, resi 157 Executive: Colored 8 atoms. PyMOL>set_color color158, [0,0,255] Color: "color158" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color158, resi 158 Executive: Colored 9 atoms. PyMOL>set_color color159, [0,0,255] Color: "color159" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color159, resi 159 Executive: Colored 8 atoms. PyMOL>set_color color160, [0,0,255] Color: "color160" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color160, resi 160 Executive: Colored 12 atoms. PyMOL>set_color color161, [0,0,255] Color: "color161" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color161, resi 161 Executive: Colored 8 atoms. PyMOL>set_color color162, [0,0,255] Color: "color162" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color162, resi 162 Executive: Colored 9 atoms. PyMOL>set_color color163, [0,0,255] Color: "color163" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color163, resi 163 Executive: Colored 8 atoms. PyMOL>set_color color164, [0,0,255] Color: "color164" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color164, resi 164 Executive: Colored 8 atoms. PyMOL>set_color color165, [0,0,255] Color: "color165" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color165, resi 165 Executive: Colored 7 atoms. PyMOL>set_color color166, [0,0,255] Color: "color166" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color166, resi 166 Executive: Colored 6 atoms. PyMOL>set_color color167, [0,0,255] Color: "color167" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color167, resi 167 Executive: Colored 9 atoms. PyMOL>set_color color168, [0,0,255] Color: "color168" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color168, resi 168 Executive: Colored 8 atoms. PyMOL>set_color color169, [0,0,255] Color: "color169" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color169, resi 169 Executive: Colored 12 atoms. PyMOL>set_color color170, [0,0,255] Color: "color170" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color170, resi 170 Executive: Colored 9 atoms. PyMOL>set_color color171, [0,0,255] Color: "color171" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color171, resi 171 Executive: Colored 8 atoms. PyMOL>set_color color172, [0,0,255] Color: "color172" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color172, resi 172 Executive: Colored 12 atoms. PyMOL>set_color color173, [0,0,255] Color: "color173" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color173, resi 173 Executive: Colored 12 atoms. PyMOL>set_color color174, [0,0,255] Color: "color174" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color174, resi 174 Executive: Colored 9 atoms. PyMOL>set_color color175, [0,0,255] Color: "color175" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color175, resi 175 Executive: Colored 4 atoms. PyMOL>set_color color176, [0,0,255] Color: "color176" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color176, resi 176 Executive: Colored 8 atoms. PyMOL>set_color color177, [0,0,255] Color: "color177" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color177, resi 177 Executive: Colored 9 atoms. PyMOL>set_color color178, [0,0,255] Color: "color178" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color178, resi 178 Executive: Colored 8 atoms. PyMOL>set_color color179, [0,0,255] Color: "color179" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color179, resi 179 Executive: Colored 9 atoms. PyMOL>set_color color180, [0,0,255] Color: "color180" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color180, resi 180 Executive: Colored 9 atoms. PyMOL>set_color color181, [0,0,255] Color: "color181" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color181, resi 181 Executive: Colored 10 atoms. PyMOL>set_color color182, [0,0,255] Color: "color182" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color182, resi 182 Executive: Colored 9 atoms. PyMOL>set_color color183, [0,0,255] Color: "color183" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color183, resi 183 Executive: Colored 12 atoms. PyMOL>set_color color184, [0,0,255] Color: "color184" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color184, resi 184 Executive: Colored 9 atoms. PyMOL>set_color color185, [0,0,255] Color: "color185" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color185, resi 185 Executive: Colored 8 atoms. PyMOL>set_color color186, [0,0,255] Color: "color186" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color186, resi 186 Executive: Colored 9 atoms. PyMOL>set_color color187, [0,0,255] Color: "color187" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color187, resi 187 Executive: Colored 8 atoms. PyMOL>set_color color188, [0,0,255] Color: "color188" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color188, resi 188 Executive: Colored 8 atoms. PyMOL>set_color color189, [0,0,255] Color: "color189" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color189, resi 189 Executive: Colored 8 atoms. PyMOL>set_color color190, [0,0,255] Color: "color190" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color190, resi 190 Executive: Colored 9 atoms. PyMOL>set_color color191, [0,0,255] Color: "color191" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color191, resi 191 Executive: Colored 8 atoms. PyMOL>set_color color192, [0,0,255] Color: "color192" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color192, resi 192 Executive: Colored 8 atoms. PyMOL>set_color color193, [0,0,255] Color: "color193" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color193, resi 193 Executive: Colored 8 atoms. PyMOL>set_color color194, [0,0,255] Color: "color194" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color194, resi 194 Executive: Colored 11 atoms. PyMOL>set_color color195, [0,0,255] Color: "color195" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color195, resi 195 Executive: Colored 8 atoms. PyMOL>set_color color196, [0,0,255] Color: "color196" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color196, resi 196 Executive: Colored 12 atoms. PyMOL>set_color color197, [0,0,255] Color: "color197" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color197, resi 197 Executive: Colored 7 atoms. PyMOL>set_color color198, [0,0,255] Color: "color198" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color198, resi 198 Executive: Colored 8 atoms. PyMOL>set_color color199, [0,0,255] Color: "color199" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color199, resi 199 Executive: Colored 4 atoms. PyMOL>set_color color200, [0,0,255] Color: "color200" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color200, resi 200 Executive: Colored 8 atoms. PyMOL>set_color color201, [0,0,255] Color: "color201" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color201, resi 201 Executive: Colored 11 atoms. PyMOL>set_color color202, [0,0,255] Color: "color202" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color202, resi 202 Executive: Colored 4 atoms. PyMOL>set_color color203, [0,0,255] Color: "color203" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color203, resi 203 Executive: Colored 6 atoms. PyMOL>set_color color204, [0,0,255] Color: "color204" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color204, resi 204 Executive: Colored 5 atoms. PyMOL>set_color color205, [0,0,255] Color: "color205" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color205, resi 205 Executive: Colored 8 atoms. PyMOL>set_color color206, [0,0,255] Color: "color206" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color206, resi 206 Executive: Colored 9 atoms. PyMOL>set_color color207, [0,0,255] Color: "color207" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color207, resi 207 Executive: Colored 8 atoms. PyMOL>set_color color208, [0,0,255] Color: "color208" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color208, resi 208 Executive: Colored 4 atoms. PyMOL>set_color color209, [0,0,255] Color: "color209" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color209, resi 209 Executive: Colored 7 atoms. PyMOL>set_color color210, [0,0,255] Color: "color210" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color210, resi 210 Executive: Colored 8 atoms. PyMOL>set_color color211, [0,0,255] Color: "color211" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color211, resi 211 Executive: Colored 9 atoms. PyMOL>set_color color212, [0,0,255] Color: "color212" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color212, resi 212 Executive: Colored 8 atoms. PyMOL>set_color color213, [0,0,255] Color: "color213" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color213, resi 213 Executive: Colored 6 atoms. PyMOL>set_color color214, [0,0,255] Color: "color214" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color214, resi 214 Executive: Colored 8 atoms. PyMOL>set_color color215, [0,0,255] Color: "color215" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color215, resi 215 Executive: Colored 8 atoms. PyMOL>set_color color216, [0,0,255] Color: "color216" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color216, resi 216 Executive: Colored 8 atoms. PyMOL>set_color color217, [0,0,255] Color: "color217" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color217, resi 217 Executive: Colored 7 atoms. PyMOL>set_color color218, [0,0,255] Color: "color218" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color218, resi 218 Executive: Colored 8 atoms. PyMOL>set_color color219, [0,0,255] Color: "color219" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color219, resi 219 Executive: Colored 9 atoms. PyMOL>set_color color220, [0,255,0] Color: "color220" defined as [ 0.000, 1.000, 0.000 ]. PyMOL>color color220, resi 220 Executive: Colored 9 atoms. PyMOL>set_color color221, [0,0,255] Color: "color221" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color221, resi 221 Executive: Colored 8 atoms. PyMOL>set_color color222, [0,255,0] Color: "color222" defined as [ 0.000, 1.000, 0.000 ]. PyMOL>color color222, resi 222 Executive: Colored 8 atoms. PyMOL>set_color color223, [0,0,255] Color: "color223" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color223, resi 223 Executive: Colored 9 atoms. PyMOL>set_color color224, [0,0,255] Color: "color224" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color224, resi 224 Executive: Colored 7 atoms. PyMOL>set_color color225, [0,0,255] Color: "color225" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color225, resi 225 Executive: Colored 12 atoms. PyMOL>set_color color226, [0,0,255] Color: "color226" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color226, resi 226 Executive: Colored 12 atoms. PyMOL>set_color color227, [0,0,255] Color: "color227" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color227, resi 227 Executive: Colored 9 atoms. PyMOL>set_color color228, [0,0,255] Color: "color228" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color228, resi 228 Executive: Colored 8 atoms. PyMOL>set_color color229, [0,0,255] Color: "color229" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color229, resi 229 Executive: Colored 8 atoms. PyMOL>set_color color230, [0,0,255] Color: "color230" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color230, resi 230 Executive: Colored 9 atoms. PyMOL>set_color color231, [0,0,255] Color: "color231" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color231, resi 231 Executive: Colored 7 atoms. PyMOL>set_color color232, [0,0,255] Color: "color232" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color232, resi 232 Executive: Colored 6 atoms. PyMOL>set_color color233, [0,0,255] Color: "color233" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color233, resi 233 Executive: Colored 4 atoms. PyMOL>set_color color234, [0,0,255] Color: "color234" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color234, resi 234 Executive: Colored 11 atoms. PyMOL>set_color color235, [0,0,255] Color: "color235" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color235, resi 235 Executive: Colored 9 atoms. PyMOL>set_color color236, [0,0,255] Color: "color236" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color236, resi 236 Executive: Colored 6 atoms. PyMOL>set_color color237, [0,0,255] Color: "color237" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color237, resi 237 Executive: Colored 8 atoms. PyMOL>set_color color238, [0,0,255] Color: "color238" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color238, resi 238 Executive: Colored 7 atoms. PyMOL>set_color color239, [0,0,255] Color: "color239" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color239, resi 239 Executive: Colored 12 atoms. PyMOL>set_color color240, [0,0,255] Color: "color240" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color240, resi 240 Executive: Colored 4 atoms. PyMOL>set_color color241, [0,0,255] Color: "color241" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color241, resi 241 Executive: Colored 7 atoms. PyMOL>set_color color242, [0,0,255] Color: "color242" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color242, resi 242 Executive: Colored 8 atoms. PyMOL>set_color color243, [0,0,255] Color: "color243" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color243, resi 243 Executive: Colored 9 atoms. PyMOL>set_color color244, [0,0,255] Color: "color244" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color244, resi 244 Executive: Colored 8 atoms. PyMOL>set_color color245, [0,0,255] Color: "color245" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color245, resi 245 Executive: Colored 4 atoms. PyMOL>set_color color246, [0,0,255] Color: "color246" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color246, resi 246 Executive: Colored 7 atoms. PyMOL>set_color color247, [0,0,255] Color: "color247" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color247, resi 247 Executive: Colored 8 atoms. PyMOL>set_color color248, [0,0,255] Color: "color248" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color248, resi 248 Executive: Colored 7 atoms. PyMOL>set_color color249, [0,0,255] Color: "color249" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color249, resi 249 Executive: Colored 4 atoms. PyMOL>set_color color250, [0,0,255] Color: "color250" defined as [ 0.000, 0.000, 1.000 ]. PyMOL>color color250, resi 250 Executive: Colored 8 atoms. PyMOL>orient PyMOL>ray 800,800 Ray: render time: 0.79 sec. = 4580.1 frames/hour (0.79 sec. accum.). PyMOL>png Richardson_rama.png ScenePNG: wrote 800x800 pixel image to file "Richardson_rama.png". PyMOL>quit