Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    ISOMERASE                               25-OCT-05   2ES7              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF Q8ZP25 FROM SALMONELLA TYPHIMURIUM LT2. NESG     
  > ReadCoordsPdb(): >> TITLE    2 TARGET STR70                                                         
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
  > ReadCoordsPdb(): >> COMPND   2 MOLECULE: PUTATIVE THIOL-DISULFIDE ISOMERASE AND THIOREDOXIN;        
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  3280 ATOM records read from file 
  > ReadCoordsPdb(): -->  3280 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     3280 (2092 C, 0 H, 600 O, 572 N, 0 S, 0 Q, 16 Metals)
  > INFO_mol: # residues:     412 (Avg. mol. weight: 106.0)
  > INFO_mol: # -- M.W. : 43690.2 g/mol. (43.69 kD)     Estimated RoG <S2>:  21.68 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 412
  > INFO_mol: Radius of Gyration <S2> :    30.7973  angstroms 
  > INFO_mol: Center of Masses: x_cm(19.660), y_cm(10.256), z_cm(36.943) 

  > INFO_res:  FSALWQRLLT RGWQPVEASV GDGVILLSSD PRRSDNPVIA ELLREFPQFD 
  > INFO_res:  WQVAVADLEQ SEAIGDRFNV RRFPATLVFT DGALSGIHPW AELLTLRSIV 
  > INFO_res:  DFSALWQRLL TRGWQPVEAS VGDGVILLSS DPRRSDNPVI AELLREFPQF 
  > INFO_res:  DWQVAVADLE QSEAIGDRFN VRRFPATLVF TDGALSGIHP WAELLTLRSI 
  > INFO_res:  VDFSALWQRL LTRGWQPVEA SVGDGVILLS SDPRRSDNPV IAELLREFPQ 
  > INFO_res:  FDWQVAVADL EQSEAIGDRF NVRRFPATLV FTDGALSGIH PWAELLTLRS 
  > INFO_res:  IVDFSALWQR LLTRGWQPVE ASVGDGVILL SSDPRRSDNP VIAELLREFP 
  > INFO_res:  QFDWQVAVAD LEQSEAIGDR FNVRRFPATL VFTDGALSGI HPWAELLTLR 
  > INFO_res:  SIVD
  > INFO_res:  
  > INFO_res:  PHE  SER  ALA  LEU  TRP  GLN  ARG  LEU  LEU  THR  ARG  GLY  
  > INFO_res:  TRP  GLN  PRO  VAL  GLU  ALA  SER  VAL  GLY  ASP  GLY  VAL  
  > INFO_res:  ILE  LEU  LEU  SER  SER  ASP  PRO  ARG  ARG  SER  ASP  ASN  
  > INFO_res:  PRO  VAL  MSE  ILE  ALA  GLU  LEU  LEU  ARG  GLU  PHE  PRO  
  > INFO_res:  GLN  PHE  ASP  TRP  GLN  VAL  ALA  VAL  ALA  ASP  LEU  GLU  
  > INFO_res:  GLN  SER  GLU  ALA  ILE  GLY  ASP  ARG  PHE  ASN  VAL  ARG  
  > INFO_res:  ARG  PHE  PRO  ALA  THR  LEU  VAL  PHE  THR  ASP  GLY  ALA  
  > INFO_res:  LEU  SER  GLY  ILE  HIS  PRO  TRP  ALA  GLU  LEU  LEU  THR  
  > INFO_res:  LEU  MSE  ARG  SER  ILE  VAL  ASP  PHE  SER  ALA  LEU  TRP  
  > INFO_res:  GLN  ARG  LEU  LEU  THR  ARG  GLY  TRP  GLN  PRO  VAL  GLU  
  > INFO_res:  ALA  SER  VAL  GLY  ASP  GLY  VAL  ILE  LEU  LEU  SER  SER  
  > INFO_res:  ASP  PRO  ARG  ARG  SER  ASP  ASN  PRO  VAL  MSE  ILE  ALA  
  > INFO_res:  GLU  LEU  LEU  ARG  GLU  PHE  PRO  GLN  PHE  ASP  TRP  GLN  
  > INFO_res:  VAL  ALA  VAL  ALA  ASP  LEU  GLU  GLN  SER  GLU  ALA  ILE  
  > INFO_res:  GLY  ASP  ARG  PHE  ASN  VAL  ARG  ARG  PHE  PRO  ALA  THR  
  > INFO_res:  LEU  VAL  PHE  THR  ASP  GLY  ALA  LEU  SER  GLY  ILE  HIS  
  > INFO_res:  PRO  TRP  ALA  GLU  LEU  LEU  THR  LEU  MSE  ARG  SER  ILE  
  > INFO_res:  VAL  ASP  PHE  SER  ALA  LEU  TRP  GLN  ARG  LEU  LEU  THR  
  > INFO_res:  ARG  GLY  TRP  GLN  PRO  VAL  GLU  ALA  SER  VAL  GLY  ASP  
  > INFO_res:  GLY  VAL  ILE  LEU  LEU  SER  SER  ASP  PRO  ARG  ARG  SER  
  > INFO_res:  ASP  ASN  PRO  VAL  MSE  ILE  ALA  GLU  LEU  LEU  ARG  GLU  
  > INFO_res:  PHE  PRO  GLN  PHE  ASP  TRP  GLN  VAL  ALA  VAL  ALA  ASP  
  > INFO_res:  LEU  GLU  GLN  SER  GLU  ALA  ILE  GLY  ASP  ARG  PHE  ASN  
  > INFO_res:  VAL  ARG  ARG  PHE  PRO  ALA  THR  LEU  VAL  PHE  THR  ASP  
  > INFO_res:  GLY  ALA  LEU  SER  GLY  ILE  HIS  PRO  TRP  ALA  GLU  LEU  
  > INFO_res:  LEU  THR  LEU  MSE  ARG  SER  ILE  VAL  ASP  PHE  SER  ALA  
  > INFO_res:  LEU  TRP  GLN  ARG  LEU  LEU  THR  ARG  GLY  TRP  GLN  PRO  
  > INFO_res:  VAL  GLU  ALA  SER  VAL  GLY  ASP  GLY  VAL  ILE  LEU  LEU  
  > INFO_res:  SER  SER  ASP  PRO  ARG  ARG  SER  ASP  ASN  PRO  VAL  MSE  
  > INFO_res:  ILE  ALA  GLU  LEU  LEU  ARG  GLU  PHE  PRO  GLN  PHE  ASP  
  > INFO_res:  TRP  GLN  VAL  ALA  VAL  ALA  ASP  LEU  GLU  GLN  SER  GLU  
  > INFO_res:  ALA  ILE  GLY  ASP  ARG  PHE  ASN  VAL  ARG  ARG  PHE  PRO  
  > INFO_res:  ALA  THR  LEU  VAL  PHE  THR  ASP  GLY  ALA  LEU  SER  GLY  
  > INFO_res:  ILE  HIS  PRO  TRP  ALA  GLU  LEU  LEU  THR  LEU  MSE  ARG  
  > INFO_res:  SER  ILE  VAL  ASP  
  > INFO_res:  
  > INFO_res:  36 ALA    36 ARG     8 ASN    32 ASP    20 GLN    24 GLU  
  > INFO_res:  24 GLY     4 HIS    20 ILE    52 LEU    24 PHE    24 PRO  
  > INFO_res:  32 SER    16 THR    16 TRP    36 VAL     8 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 4 [4] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...