| NESG ID: | NAME |
| PDB ID: | |
| Deposition date: | |
| Common Name: | |
| Class: | |
| Length (a.a.): | 412 |
| Organism: | |
| SwissProt / TrEMBL ID: | |
| Oligomerization: | tetramer |
| Molecular weight: | 46386 |
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Procheck analysis,RMSD calculation and structure superimposition are based on: all residues
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Secondary Structure Elements:
Inter-chain break(s) between 125 & 136, 254 & 265, 383 & 394
alpha helices: 8A-15A, 54A-63A, 77A-85A, 113A-124A, 8B-15B, 54B-63B, 77B-85B, 113B-124B, 8C-15C, 54C-63C, 77C-85C, 113C-124C, 8D-15D, 54D-63D, 77D-85D, 113D-124D
beta strands: 20N-21N, 71N-75N, 37Y-41Y, 94A-98A, 107U-108U, 20N-21N, 71N-75N, 36P-41P, 94A-99A, 107U-108U, 20N-21N, 71N-75N, 36P-41P, 94A-99A, 107U-108U, 20N-21N, 71N-75N, 36P-41P, 94A-99A, 107U-108U
| Resolution: | 2.800 Å | R-factor: | 0.285 | R-free: | 0.338 |
Structure Factors deposited in the PDB? no
Ramachandran Plot Summary from Procheck
| Most favoured regions | Additionally allowed regions | Generously allowed regions | Disallowed regions |
| 85.6% | 13.1% | 1.3% | 0.0% |
Ramachandran Plot Summary from Richardson Lab's Molprobity
| Most favoured regions | Allowed regions | Disallowed regions | View plot View model summary |
| 90% | 8.7% | 1.3% |
Global quality scores
| Program | Verify3D | ProsaII (-ve) | Procheck (phi-psi) | Procheck (all) | MolProbity Clashscore |
| -Raw score | 0.43 | 0.37 | -0.35 | -0.30 | 37.44 |
| Z-score1 | -0.48 | -1.16 | -1.06 | -1.77 | -4.90 |
Close Contacts and Deviations from Ideal Geometry (from PDB validation software)
| Number of close contacts (within 2.2 Å): | 0 |
| RMS deviation for bond angles: | 2.4 ° |
| RMS deviation for bond lengths: | 0.016 Å |
1 With respect to mean and standard deviation for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score
Residue Plot of Ramachandran anlysis(based on data from Richardson Lab's Molprobity)
References:
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