read coor pdb STR70_R3Cons_em_bcr3.pdb
all
rmsd coor heavy 9A-17A,20A-41A,58A-74A,78A-88A,93A-106A,115A-125A
ave
resSel_rmsd_heavy
rmsd coor backbone 9A-17A,20A-41A,58A-74A,78A-88A,93A-106A,115A-125A
ave
resSel_rmsd_bb
write
selSi.pdb
coor
all
all
pdb
quit