Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `STR65_NMR_em_bcr3.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   29-DEC-06   2JN8              
  > ReadCoordsPdb(): >> TITLE     SOLUTION NMR STRUCTURE OF Q8ZRJ2 FROM SALMONELLA                      
  > ReadCoordsPdb(): >> TITLE    2 TYPHIMURIUM. NORTHEAST STRUCTURAL GENOMICS TARGET STR65.             
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
  > ReadCoordsPdb(): >> COMPND   2 MOLECULE: PUTATIVE CYTOPLASMIC PROTEIN;                              
   1  > ReadCoordsPdb(): Counting models in file `STR65_NMR_em_bcr3.pdb'; Model:    2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
  > ReadCoordsPdb(): After scanning there is(are) 20 model(s) 
  > ReadCoordsPdb(): what model do you want [(1 to 20) or all] ?_   > ReadCoordsPdb(): Reading *all* models in file STR65_NMR_em_bcr3.pdb
  > ReadCoordsPdb(): Reading a total of (20) models in file
  > ReadCoordsPdb(): I'm reading!, model   0

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): --> 34000 ATOM records read from file
  > ReadCoordsPdb(): --> 34000 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > ReadCoordsPdb(): ** monomer, 1 [1] chains ** 


PdbStat>   > RMSD_coords : Enter ranges [3-20,25,30-67] ?_ :   > RMSD_coords : Reference structure (1-20) or (average) ?_    > do_average_coords(): Making average for backbone atoms 
  > do_average_coords(): Calculating center of masses 
  > do_average_coords(): Calling optimal rotation for backbone onto model  1 
  > do_average_coords(): Calc. average coordinates backbone 
  > RMSD_coords : File name for RMSDs (def. `rmsd.pdbstat')?_ : 

 > Kabsch RMSD of backb atoms in res. *[1..109],for model  1 is: 1.720 (*)
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  2 is: 1.963
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  3 is: 3.287
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  4 is: 3.164
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  5 is: 2.475
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  6 is: 3.995
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  7 is: 1.933
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  8 is: 3.017
 > Kabsch RMSD of backb atoms in res. *[1..109],for model  9 is: 4.040
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 10 is: 3.040
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 11 is: 2.832
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 12 is: 3.148
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 13 is: 1.900
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 14 is: 2.496
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 15 is: 3.039
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 16 is: 1.792
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 17 is: 2.095
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 18 is: 2.972
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 19 is: 2.230
 > Kabsch RMSD of backb atoms in res. *[1..109],for model 20 is: 3.540
 >
 > Kabsch RMSD statistics for 20 structures: 
 > Mean RMSD using as refer. str. `average' for res.[1..109], is: 2.734 
 > Range of RMSD values to reference struct. is 1.720 to 4.040

PdbStat>   > RMSD_coords : Enter ranges [3-20,25,30-67] ?_ :   > RMSD_coords : Reference structure (1-20) or (average) ?_    > do_average_coords(): Making average for heavy atoms 
  > do_average_coords(): Calculating center of masses 
  > do_average_coords(): Calling optimal rotation for heavy onto model  1 
  > do_average_coords(): Calc. average coordinates heavy 
  > RMSD_coords : File name for RMSDs (def. `rmsd.pdbstat')?_ : 

 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  1 is: 2.219 (*)
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  2 is: 2.610
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  3 is: 3.816
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  4 is: 3.658
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  5 is: 2.801
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  6 is: 4.542
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  7 is: 2.540
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  8 is: 3.312
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model  9 is: 4.399
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 10 is: 3.472
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 11 is: 3.213
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 12 is: 3.583
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 13 is: 2.466
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 14 is: 2.846
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 15 is: 3.422
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 16 is: 2.291
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 17 is: 2.707
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 18 is: 3.535
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 19 is: 2.723
 > Kabsch RMSD of heavy atoms in res. *[1..109],for model 20 is: 3.880
 >
 > Kabsch RMSD statistics for 20 structures: 
 > Mean RMSD using as refer. str. `average' for res.[1..109], is: 3.202 
 > Range of RMSD values to reference struct. is 2.219 to 4.542

PdbStat> 
PdbStat>  *END* of program detected, BYE! ...