Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total1661
intra-residue [i = j]542
sequential [| i - j | = 1]444
medium range [1 < | i - j | < 5]362
long range [| i - j | ≥ 5]313
NOE constraints per restrained residue b13.4
Dihedral-angle constraints:273
Total number of restricting constraints b1934
Total number of restricting constraints per restrained residue b15.6
Restricting long-range constraints per restrained residue b2.5
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å20.9
0.2 - 0.5 Å14.8
> 0.5 Å2.1
RMS of distance violation / constraint0.03 Å
Maximum distance violation d1.24 Å
Dihedral angle violations / structure
1 - 10 °1.6
> 10 °0.2
RMS of dihedral angle violation / constraint0.59 °
Maximum dihedral angle violation d22.80 °
RPF scores
RecallPrecisionF-measureDP-score
0.9870.8620.920.697
RMSD Values
allorderedeSelectedf
All backbone atoms1.9 Å0.6 Å0.6 Å
All heavy atoms2.4 Å0.9 Å0.9 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)0.76N/A3.30
Procheck G-factor e (all dihedral angles)0.69N/A4.08
Verify3D0.340.0266-1.93
ProsaII (-ve)0.850.04710.83
MolProbity clashscore4.121.17990.82
General linear model RMSD prediction1.06
Ramachandran Plot Summary from Procheck f
Most favoured regions98.0%
Additionally allowed regions2.0%
Generously allowed regions0.1%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions99.7%
Allowed regions0.3%
Disallowed regions0%


a Analysed for residues 1 to 129
b There are 124 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 6A-56A,63A-70A,73A-91A,100A-122A
f Residues selected based on: User defined residues

Selected residue ranges: 6A-45A,47A-56A,63A-70A,73A-91A,100A-122A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4