Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   23-MAR-10   3MA5              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE TETRATRICOPEPTIDE REPEAT DOMAIN              
  > ReadCoordsPdb(): >> TITLE    2 PROTEIN Q2S6C5_SALRD FROM SALINIBACTER RUBER. NORTHEAST              
  > ReadCoordsPdb(): >> TITLE    3 STRUCTURAL GENOMICS CONSORTIUM TARGET SRR115C.                       
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  2704 ATOM records read from file 
  > ReadCoordsPdb(): -->  2704 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     2704 (1685 C, 0 H, 568 O, 451 N, 0 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:     337 (Avg. mol. weight: 105.8)
  > INFO_mol: # -- M.W. : 35642.2 g/mol. (35.64 kD)     Estimated RoG <S2>:  20.09 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 337
  > INFO_mol: Radius of Gyration <S2> :    23.6961  angstroms 
  > INFO_mol: Center of Masses: x_cm(-12.975), y_cm(-26.418), z_cm(-4.169) 

  > INFO_res:  EDPFTRYALA QEHLKHDNAS RALALFEELV ETDPDYVGTY YHLGKLYERL 
  > INFO_res:  DRTDDAIDTY AQGIEVAREE GTQKDLSELQ DAKLKAEGLE EDPFTRYALA 
  > INFO_res:  QEHLKHDNAS RALALFEELV ETDPDYVGTY YHLGKLYERL DRTDDAIDTY 
  > INFO_res:  AQGIEVAREE GTQKDLSELQ DAKLKAEGLE DPFTRYALAQ EHLKHDNASR 
  > INFO_res:  ALALFEELVE TDPDYVGTYY HLGKLYERLD RTDDAIDTYA QGIEVAREEG 
  > INFO_res:  TQKDLSELQD AKLKAEGLES RALALFEELV ETDPDYVGTY YHLGKLYERL 
  > INFO_res:  DRTDDAIDTY AQGIEVAREE GTQKDLSELQ DAKLKAE
  > INFO_res:  
  > INFO_res:  GLU  ASP  PRO  PHE  THR  ARG  TYR  ALA  LEU  ALA  GLN  GLU  
  > INFO_res:  HIS  LEU  LYS  HIS  ASP  ASN  ALA  SER  ARG  ALA  LEU  ALA  
  > INFO_res:  LEU  PHE  GLU  GLU  LEU  VAL  GLU  THR  ASP  PRO  ASP  TYR  
  > INFO_res:  VAL  GLY  THR  TYR  TYR  HIS  LEU  GLY  LYS  LEU  TYR  GLU  
  > INFO_res:  ARG  LEU  ASP  ARG  THR  ASP  ASP  ALA  ILE  ASP  THR  TYR  
  > INFO_res:  ALA  GLN  GLY  ILE  GLU  VAL  ALA  ARG  GLU  GLU  GLY  THR  
  > INFO_res:  GLN  LYS  ASP  LEU  SER  GLU  LEU  GLN  ASP  ALA  LYS  LEU  
  > INFO_res:  LYS  ALA  GLU  GLY  LEU  GLU  GLU  ASP  PRO  PHE  THR  ARG  
  > INFO_res:  TYR  ALA  LEU  ALA  GLN  GLU  HIS  LEU  LYS  HIS  ASP  ASN  
  > INFO_res:  ALA  SER  ARG  ALA  LEU  ALA  LEU  PHE  GLU  GLU  LEU  VAL  
  > INFO_res:  GLU  THR  ASP  PRO  ASP  TYR  VAL  GLY  THR  TYR  TYR  HIS  
  > INFO_res:  LEU  GLY  LYS  LEU  TYR  GLU  ARG  LEU  ASP  ARG  THR  ASP  
  > INFO_res:  ASP  ALA  ILE  ASP  THR  TYR  ALA  GLN  GLY  ILE  GLU  VAL  
  > INFO_res:  ALA  ARG  GLU  GLU  GLY  THR  GLN  LYS  ASP  LEU  SER  GLU  
  > INFO_res:  LEU  GLN  ASP  ALA  LYS  LEU  LYS  ALA  GLU  GLY  LEU  GLU  
  > INFO_res:  ASP  PRO  PHE  THR  ARG  TYR  ALA  LEU  ALA  GLN  GLU  HIS  
  > INFO_res:  LEU  LYS  HIS  ASP  ASN  ALA  SER  ARG  ALA  LEU  ALA  LEU  
  > INFO_res:  PHE  GLU  GLU  LEU  VAL  GLU  THR  ASP  PRO  ASP  TYR  VAL  
  > INFO_res:  GLY  THR  TYR  TYR  HIS  LEU  GLY  LYS  LEU  TYR  GLU  ARG  
  > INFO_res:  LEU  ASP  ARG  THR  ASP  ASP  ALA  ILE  ASP  THR  TYR  ALA  
  > INFO_res:  GLN  GLY  ILE  GLU  VAL  ALA  ARG  GLU  GLU  GLY  THR  GLN  
  > INFO_res:  LYS  ASP  LEU  SER  GLU  LEU  GLN  ASP  ALA  LYS  LEU  LYS  
  > INFO_res:  ALA  GLU  GLY  LEU  GLU  SER  ARG  ALA  LEU  ALA  LEU  PHE  
  > INFO_res:  GLU  GLU  LEU  VAL  GLU  THR  ASP  PRO  ASP  TYR  VAL  GLY  
  > INFO_res:  THR  TYR  TYR  HIS  LEU  GLY  LYS  LEU  TYR  GLU  ARG  LEU  
  > INFO_res:  ASP  ARG  THR  ASP  ASP  ALA  ILE  ASP  THR  TYR  ALA  GLN  
  > INFO_res:  GLY  ILE  GLU  VAL  ALA  ARG  GLU  GLU  GLY  THR  GLN  LYS  
  > INFO_res:  ASP  LEU  SER  GLU  LEU  GLN  ASP  ALA  LYS  LEU  LYS  ALA  
  > INFO_res:  GLU  
  > INFO_res:  
  > INFO_res:  37 ALA    19 ARG     3 ASN    38 ASP    15 GLN    44 GLU  
  > INFO_res:  19 GLY    10 HIS     8 ILE    45 LEU    19 LYS     7 PHE  
  > INFO_res:   7 PRO     8 SER    23 THR    23 TYR    12 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 4 [4] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...