PyMOL>load ./SR384_XRay_em_bcr3_noHs_H.pdb,obj HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-NOV-07 3BHP TITLE CRYSTAL STRUCTURE OF UPF0291 PROTEIN YNZC FROM BACILLUS TITLE 2 SUBTILIS AT RESOLUTION 2.0 A. NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET SR384 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0291 PROTEIN YNZC; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 1-52; COMPND 5 ENGINEERED: YES ObjectMolecule: Read secondary structure assignments. ObjectMolecule: Read crystal symmetry information. Symmetry: Found 4 symmetry operators. CmdLoad: "./SR384_XRay_em_bcr3_noHs_H.pdb" loaded as "obj". PyMOL>hide everything, all PyMOL>dss PyMOL>show cartoon, all PyMOL>set bg_rgb, [1,1,1] Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ]. PyMOL>color red, ss h Executive: Colored 1272 atoms. PyMOL>color cyan,ss s PyMOL>color gray,ss ""+l Executive: Colored 1232 atoms. PyMOL>set cartoon_highlight_color,yellow Setting: cartoon_highlight_color set to yellow. PyMOL>orient PyMOL>set ray_trace_mode, 3 Setting: ray_trace_mode set to 3. PyMOL>set antialias, 2 Setting: antialias set to 2. PyMOL>ray 600,600 Ray: render time: 1.90 sec. = 1896.3 frames/hour (1.90 sec. accum.). PyMOL>png molecule.png ScenePNG: wrote 600x600 pixel image to file "molecule.png". PyMOL>set stereo,1 Setting: stereo set to on. PyMOL>stereo walleye Setting: stereo_mode set to 3. PyMOL>select bb,n. c+ca+n Selector: selection "bb" defined with 462 atoms. PyMOL>hide everything,all PyMOL>show lines,bb PyMOL>color blue,bb Executive: Colored 462 atoms. PyMOL>set line_width,2 Setting: line_width set to 2.00000. PyMOL>set bg_rgb, [1,1,1] Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ]. PyMOL>zoom complete=1 PyMOL>set ray_trace_mode, 0 Setting: ray_trace_mode set to 0. PyMOL>ray 1200,600 Ray: render time: 0.82 sec. = 4368.5 frames/hour (2.72 sec. accum.). PyMOL>png stereo.png ScenePNG: wrote 1200x600 pixel image to file "stereo.png". PyMOL>quit