PyMOL>load ./SR213_XRay_em_bcr3_noHs_H.pdb,obj
HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   03-OCT-06   2IM8
TITLE     X-RAY CRYSTAL STRUCTURE OF PROTEIN YPPE FROM BACILLUS
TITLE    2 SUBTILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET
TITLE    3 SR213.
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: HYPOTHETICAL PROTEIN YPPE;
COMPND   3 CHAIN: A, B;
COMPND   4 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 4 symmetry operators.
 CmdLoad: "./SR213_XRay_em_bcr3_noHs_H.pdb" loaded as "obj".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color red, ss h
 Executive: Colored 3254 atoms.
PyMOL>color cyan,ss s
PyMOL>color gray,ss ""+l
 Executive: Colored 659 atoms.
PyMOL>set cartoon_highlight_color,yellow
 Setting: cartoon_highlight_color set to yellow.
PyMOL>orient
PyMOL>set ray_trace_mode, 3
 Setting: ray_trace_mode set to 3.
PyMOL>set antialias, 2
 Setting: antialias set to 2.
PyMOL>ray 600,600
 Ray: render time: 3.22 sec. = 1118.1 frames/hour (3.22 sec. accum.).
PyMOL>png molecule.png
 ScenePNG: wrote 600x600 pixel image to file "molecule.png".
PyMOL>set stereo,1
 Setting: stereo set to on.
PyMOL>stereo walleye
 Setting: stereo_mode set to 3.
PyMOL>select bb,n. c+ca+n
 Selector: selection "bb" defined with 717 atoms.
PyMOL>hide everything,all
PyMOL>show lines,bb
PyMOL>color blue,bb
 Executive: Colored 717 atoms.
PyMOL>set line_width,2
 Setting: line_width set to 2.00000.
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>zoom complete=1
PyMOL>set ray_trace_mode, 0
 Setting: ray_trace_mode set to 0.
PyMOL>ray 1200,600
 Ray: render time: 1.07 sec. = 3358.1 frames/hour (4.29 sec. accum.).
PyMOL>png stereo.png
 ScenePNG: wrote 1200x600 pixel image to file "stereo.png".
PyMOL>quit