Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   03-OCT-06   2IM8              
  > ReadCoordsPdb(): >> TITLE     X-RAY CRYSTAL STRUCTURE OF PROTEIN YPPE FROM BACILLUS                 
  > ReadCoordsPdb(): >> TITLE    2 SUBTILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET            
  > ReadCoordsPdb(): >> TITLE    3 SR213.                                                               
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  1974 ATOM records read from file 
  > ReadCoordsPdb(): -->  1974 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     1974 (1240 C, 0 H, 379 O, 343 N, 0 S, 0 Q, 12 Metals)
  > INFO_mol: # residues:     239 (Avg. mol. weight: 110.8)
  > INFO_mol: # -- M.W. : 26475.1 g/mol. (26.48 kD)     Estimated RoG <S2>:  17.63 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 239
  > INFO_mol: Radius of Gyration <S2> :    19.8101  angstroms 
  > INFO_mol: Center of Masses: x_cm(13.604), y_cm(39.803), z_cm(28.726) 

  > INFO_res:  LSQTLLETEQ IEVAEKGADR YQEGKNSNHS YDFFETIKPA VEENDELAAR 
  > INFO_res:  WAEGALELIK VRRPKYVHKE QIEAVKDNFL ELVLQSYVHH IHKKRFKDIT 
  > INFO_res:  ESVLYTLHAV KDEIAREDSR LSQTLLETEQ IEVAEKGADR YQEGKNSNHS 
  > INFO_res:  YDFFETIKPA VEENDELAAR WAEGALELIK VRRPHKEQIE AVKDNFLELV 
  > INFO_res:  LQSYVHHIHK KRFKDITESV LYTLHAVKDE IAR
  > INFO_res:  
  > INFO_res:  MSE  LEU  SER  GLN  THR  LEU  LEU  GLU  MSE  THR  GLU  GLN  
  > INFO_res:  MSE  ILE  GLU  VAL  ALA  GLU  LYS  GLY  ALA  ASP  ARG  TYR  
  > INFO_res:  GLN  GLU  GLY  LYS  ASN  SER  ASN  HIS  SER  TYR  ASP  PHE  
  > INFO_res:  PHE  GLU  THR  ILE  LYS  PRO  ALA  VAL  GLU  GLU  ASN  ASP  
  > INFO_res:  GLU  LEU  ALA  ALA  ARG  TRP  ALA  GLU  GLY  ALA  LEU  GLU  
  > INFO_res:  LEU  ILE  LYS  VAL  ARG  ARG  PRO  LYS  TYR  VAL  HIS  LYS  
  > INFO_res:  GLU  GLN  ILE  GLU  ALA  VAL  LYS  ASP  ASN  PHE  LEU  GLU  
  > INFO_res:  LEU  VAL  LEU  GLN  SER  TYR  VAL  HIS  HIS  ILE  HIS  LYS  
  > INFO_res:  LYS  ARG  PHE  LYS  ASP  ILE  THR  GLU  SER  VAL  LEU  TYR  
  > INFO_res:  THR  LEU  HIS  ALA  VAL  LYS  ASP  GLU  ILE  ALA  ARG  GLU  
  > INFO_res:  ASP  SER  ARG  MSE  LEU  SER  GLN  THR  LEU  LEU  GLU  MSE  
  > INFO_res:  THR  GLU  GLN  MSE  ILE  GLU  VAL  ALA  GLU  LYS  GLY  ALA  
  > INFO_res:  ASP  ARG  TYR  GLN  GLU  GLY  LYS  ASN  SER  ASN  HIS  SER  
  > INFO_res:  TYR  ASP  PHE  PHE  GLU  THR  ILE  LYS  PRO  ALA  VAL  GLU  
  > INFO_res:  GLU  ASN  ASP  GLU  LEU  ALA  ALA  ARG  TRP  ALA  GLU  GLY  
  > INFO_res:  ALA  LEU  GLU  LEU  ILE  LYS  VAL  ARG  ARG  PRO  HIS  LYS  
  > INFO_res:  GLU  GLN  ILE  GLU  ALA  VAL  LYS  ASP  ASN  PHE  LEU  GLU  
  > INFO_res:  LEU  VAL  LEU  GLN  SER  TYR  VAL  HIS  HIS  ILE  HIS  LYS  
  > INFO_res:  LYS  ARG  PHE  LYS  ASP  ILE  THR  GLU  SER  VAL  LEU  TYR  
  > INFO_res:  THR  LEU  HIS  ALA  VAL  LYS  ASP  GLU  ILE  ALA  ARG  
  > INFO_res:  
  > INFO_res:  20 ALA    13 ARG     8 ASN    13 ASP    10 GLN    33 GLU  
  > INFO_res:   6 GLY    12 HIS    14 ILE    22 LEU    21 LYS     8 PHE  
  > INFO_res:   4 PRO    11 SER    10 THR     9 TYR     2 TRP    17 VAL  
  > INFO_res:   6 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 2 [2] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...