PyMOL>load ./SR213_NMR_em_bcr3.pdb.iupac
HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   23-JUN-06   2HFI
TITLE     SOLUTION NMR STRUCTURE OF PROTEIN YPPE FROM BACILLUS
TITLE    2 SUBTILIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET
TITLE    3 SR213
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: HYPOTHETICAL PROTEIN YPPE;
COMPND   3 CHAIN: A;
COMPND   4 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./SR213_NMR_em_bcr3.pdb.iupac" loaded as "SR213_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 2031 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color6, [0, 255, 215]
 Color: "color6" defined as [ 0.000, 1.000, 0.843 ].
PyMOL>color color6, resi 6
 Executive: Colored 19 atoms.
PyMOL>set_color color9, [0, 231, 255]
 Color: "color9" defined as [ 0.000, 0.906, 1.000 ].
PyMOL>color color9, resi 9
 Executive: Colored 17 atoms.
PyMOL>set_color color10, [0, 124, 255]
 Color: "color10" defined as [ 0.000, 0.486, 1.000 ].
PyMOL>color color10, resi 10
 Executive: Colored 14 atoms.
PyMOL>set_color color13, [51, 255, 0]
 Color: "color13" defined as [ 0.200, 1.000, 0.000 ].
PyMOL>color color13, resi 13
 Executive: Colored 17 atoms.
PyMOL>set_color color14, [0, 255, 186]
 Color: "color14" defined as [ 0.000, 1.000, 0.729 ].
PyMOL>color color14, resi 14
 Executive: Colored 19 atoms.
PyMOL>set_color color16, [47, 255, 0]
 Color: "color16" defined as [ 0.184, 1.000, 0.000 ].
PyMOL>color color16, resi 16
 Executive: Colored 16 atoms.
PyMOL>set_color color40, [0, 203, 255]
 Color: "color40" defined as [ 0.000, 0.796, 1.000 ].
PyMOL>color color40, resi 40
 Executive: Colored 19 atoms.
PyMOL>set_color color47, [0, 255, 234]
 Color: "color47" defined as [ 0.000, 1.000, 0.918 ].
PyMOL>color color47, resi 47
 Executive: Colored 14 atoms.
PyMOL>set_color color48, [0, 13, 255]
 Color: "color48" defined as [ 0.000, 0.051, 1.000 ].
PyMOL>color color48, resi 48
 Executive: Colored 12 atoms.
PyMOL>set_color color50, [0, 184, 255]
 Color: "color50" defined as [ 0.000, 0.722, 1.000 ].
PyMOL>color color50, resi 50
 Executive: Colored 19 atoms.
PyMOL>set_color color54, [0, 255, 97]
 Color: "color54" defined as [ 0.000, 1.000, 0.380 ].
PyMOL>color color54, resi 54
 Executive: Colored 24 atoms.
PyMOL>set_color color70, [0, 70, 255]
 Color: "color70" defined as [ 0.000, 0.275, 1.000 ].
PyMOL>color color70, resi 70
 Executive: Colored 16 atoms.
PyMOL>set_color color71, [0, 169, 255]
 Color: "color71" defined as [ 0.000, 0.663, 1.000 ].
PyMOL>color color71, resi 71
 Executive: Colored 18 atoms.
PyMOL>set_color color74, [0, 165, 255]
 Color: "color74" defined as [ 0.000, 0.647, 1.000 ].
PyMOL>color color74, resi 74
 Executive: Colored 17 atoms.
PyMOL>set_color color79, [0, 87, 255]
 Color: "color79" defined as [ 0.000, 0.341, 1.000 ].
PyMOL>color color79, resi 79
 Executive: Colored 22 atoms.
PyMOL>set_color color81, [0, 22, 255]
 Color: "color81" defined as [ 0.000, 0.086, 1.000 ].
PyMOL>color color81, resi 81
 Executive: Colored 14 atoms.
PyMOL>set_color color82, [255, 220, 0]
 Color: "color82" defined as [ 1.000, 0.863, 0.000 ].
PyMOL>color color82, resi 82
 Executive: Colored 20 atoms.
PyMOL>show sticks, res 82
PyMOL>set_color color83, [0, 223, 255]
 Color: "color83" defined as [ 0.000, 0.875, 1.000 ].
PyMOL>color color83, resi 83
 Executive: Colored 19 atoms.
PyMOL>set_color color85, [0, 244, 255]
 Color: "color85" defined as [ 0.000, 0.957, 1.000 ].
PyMOL>color color85, resi 85
 Executive: Colored 19 atoms.
PyMOL>set_color color86, [0, 158, 255]
 Color: "color86" defined as [ 0.000, 0.620, 1.000 ].
PyMOL>color color86, resi 86
 Executive: Colored 16 atoms.
PyMOL>set_color color88, [0, 255, 184]
 Color: "color88" defined as [ 0.000, 1.000, 0.722 ].
PyMOL>color color88, resi 88
 Executive: Colored 17 atoms.
PyMOL>set_color color89, [0, 101, 255]
 Color: "color89" defined as [ 0.000, 0.396, 1.000 ].
PyMOL>color color89, resi 89
 Executive: Colored 11 atoms.
PyMOL>set_color color90, [0, 64, 255]
 Color: "color90" defined as [ 0.000, 0.251, 1.000 ].
PyMOL>color color90, resi 90
 Executive: Colored 21 atoms.
PyMOL>set_color color94, [0, 243, 255]
 Color: "color94" defined as [ 0.000, 0.953, 1.000 ].
PyMOL>color color94, resi 94
 Executive: Colored 19 atoms.
PyMOL>set_color color98, [0, 206, 255]
 Color: "color98" defined as [ 0.000, 0.808, 1.000 ].
PyMOL>color color98, resi 98
 Executive: Colored 24 atoms.
PyMOL>set_color color99, [20, 255, 0]
 Color: "color99" defined as [ 0.078, 1.000, 0.000 ].
PyMOL>color color99, resi 99
 Executive: Colored 20 atoms.
PyMOL>set_color color102, [0, 247, 255]
 Color: "color102" defined as [ 0.000, 0.969, 1.000 ].
PyMOL>color color102, resi 102
 Executive: Colored 19 atoms.
PyMOL>set_color color107, [153, 255, 0]
 Color: "color107" defined as [ 0.600, 1.000, 0.000 ].
PyMOL>color color107, resi 107
 Executive: Colored 19 atoms.
PyMOL>set_color color109, [0, 36, 255]
 Color: "color109" defined as [ 0.000, 0.141, 1.000 ].
PyMOL>color color109, resi 109
 Executive: Colored 14 atoms.
PyMOL>set_color color110, [255, 98, 0]
 Color: "color110" defined as [ 1.000, 0.384, 0.000 ].
PyMOL>color color110, resi 110
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 110
PyMOL>set_color color112, [0, 12, 255]
 Color: "color112" defined as [ 0.000, 0.047, 1.000 ].
PyMOL>color color112, resi 112
 Executive: Colored 10 atoms.
PyMOL>set_color color117, [0, 254, 255]
 Color: "color117" defined as [ 0.000, 0.996, 1.000 ].
PyMOL>color color117, resi 117
 Executive: Colored 19 atoms.
PyMOL>label 82/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 110/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.99 sec. = 3637.8 frames/hour (0.99 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit