Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   06-AUG-10   3OBH              
  > ReadCoordsPdb(): >> TITLE     X-RAY CRYSTAL STRUCTURE OF PROTEIN SP_0782 (7-79) FROM STREPTOCOCCUS  
  > ReadCoordsPdb(): >> TITLE    2 PNEUMONIAE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SPR104   
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
  > ReadCoordsPdb(): >> COMPND   2 MOLECULE: UNCHARACTERIZED PROTEIN;                                   
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  1087 ATOM records read from file 
  > ReadCoordsPdb(): -->  1087 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     1087 (688 C, 0 H, 210 O, 179 N, 0 S, 0 Q, 10 Metals)
  > INFO_mol: # residues:     133 (Avg. mol. weight: 110.7)
  > INFO_mol: # -- M.W. : 14725.6 g/mol. (14.73 kD)     Estimated RoG <S2>:  14.11 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 133
  > INFO_mol: Radius of Gyration <S2> :    14.6879  angstroms 
  > INFO_mol: Center of Masses: x_cm(16.831), y_cm(16.498), z_cm(23.573) 

  > INFO_res:  FTFEIEEHLL TLSENEKGWT KEINRVSFNG APAKFDIRAW SPDHTKGKGI 
  > INFO_res:  TLSNEEFQTV DAFKAEFTFE IEEHLLTLSE NEKGWTKEIN RVSFNGAPAK 
  > INFO_res:  FDIRAWSPDH TKGKGITLSN EEFQTVDAF
  > INFO_res:  
  > INFO_res:  PHE  THR  PHE  GLU  ILE  GLU  GLU  HIS  LEU  LEU  THR  LEU  
  > INFO_res:  SER  GLU  ASN  GLU  LYS  GLY  TRP  THR  LYS  GLU  ILE  ASN  
  > INFO_res:  ARG  VAL  SER  PHE  ASN  GLY  ALA  PRO  ALA  LYS  PHE  ASP  
  > INFO_res:  ILE  ARG  ALA  TRP  SER  PRO  ASP  HIS  THR  LYS  MSE  GLY  
  > INFO_res:  LYS  GLY  ILE  THR  LEU  SER  ASN  GLU  GLU  PHE  GLN  THR  
  > INFO_res:  MSE  VAL  ASP  ALA  PHE  LYS  ALA  GLU  PHE  THR  PHE  GLU  
  > INFO_res:  ILE  GLU  GLU  HIS  LEU  LEU  THR  LEU  SER  GLU  ASN  GLU  
  > INFO_res:  LYS  GLY  TRP  THR  LYS  GLU  ILE  ASN  ARG  VAL  SER  PHE  
  > INFO_res:  ASN  GLY  ALA  PRO  ALA  LYS  PHE  ASP  ILE  ARG  ALA  TRP  
  > INFO_res:  SER  PRO  ASP  HIS  THR  LYS  MSE  GLY  LYS  GLY  ILE  THR  
  > INFO_res:  LEU  SER  ASN  GLU  GLU  PHE  GLN  THR  MSE  VAL  ASP  ALA  
  > INFO_res:  PHE  
  > INFO_res:  
  > INFO_res:   9 ALA     4 ARG     8 ASN     6 ASP     2 GLN    17 GLU  
  > INFO_res:   8 GLY     4 HIS     8 ILE     8 LEU    11 LYS    12 PHE  
  > INFO_res:   4 PRO     8 SER    12 THR     4 TRP     4 VAL     4 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 2 [2] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  N  A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  N  B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CA A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CA B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  C  A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  C  B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  O  A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  O  B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CB A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CB B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CG A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CG B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  SE A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  SE B] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CE A] _not_ in lib, will use as given 
PdbStat> (ToIUPAC) **WARN** Atom [MSE  72  CE B] _not_ in lib, will use as given 

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix
PdbStat> (ToPDB) **WARN** Atom [MSE  72  N  A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  N  B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CA A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CA B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  C  A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  C  B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  O  A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  O  B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CB A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CB B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CG A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CG B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  SE A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  SE B] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CE A] _not_ in lib, will use as given 
PdbStat> (ToPDB) **WARN** Atom [MSE  72  CE B] _not_ in lib, will use as given 

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...