read coor pdb SPR104_R3Cons_em_bcr3.pdb
all
rmsd coor heavy 8M-21M,25M-34M,40M-46M,57M-73M,100M-113M,117M-126M,132M-138M,149M-165M
ave
resOrd_rmsd_heavy
rmsd coor backbone 8M-21M,25M-34M,40M-46M,57M-73M,100M-113M,117M-126M,132M-138M,149M-165M
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit