Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total547
intra-residue [i = j]119
sequential [| i - j | = 1]148
medium range [1 < | i - j | < 5]57
long range [| i - j | ≥ 5]223
NOE constraints per restrained residue b9.0
Dihedral-angle constraints:0
Total number of restricting constraints b547
Total number of restricting constraints per restrained residue b9.0
Restricting long-range constraints per restrained residue b3.7
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å1.95
0.2 - 0.5 Å1.85
> 0.5 Å0.7
RMS of distance violation / constraint0.06 Å
Maximum distance violation d2.02 Å
RPF scores
RecallPrecisionF-measureDP-score
0.9720.8620.9140.755
RMSD Values
allorderedeSelectedf
All backbone atoms2.7 Å0.5 Å0.5 Å
All heavy atoms3.3 Å0.9 Å0.9 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.61N/A-2.08
Procheck G-factor e (all dihedral angles)-0.38N/A-2.25
Verify3D0.200.0399-4.17
ProsaII (-ve)0.150.0729-2.07
MolProbity clashscore18.824.2237-1.70
General linear model RMSD prediction1.56
Ramachandran Plot Summary from Procheck f
Most favoured regions89.2%
Additionally allowed regions10.8%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions96.3%
Allowed regions3.7%
Disallowed regions0%


a Analysed for residues 1 to 66
b There are 61 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 3A-18A,20A-27A,31A-36A,41A-55A
f Residues selected based on: User defined residues

Selected residue ranges: 3A-18A,20A-27A,31A-36A,41A-55A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4