Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    PROTEIN BINDING                         09-SEP-10   3OSJ              
  > ReadCoordsPdb(): >> TITLE     X-RAY STRUCTURE OF PHYCOBILISOME LCM CORE-MEMBRANE LINKER POLYPEPTIDE 
  > ReadCoordsPdb(): >> TITLE    2 (FRAGMENT 254-400) FROM SYNECHOCYSTIS SP. PCC 6803, NORTHEAST        
  > ReadCoordsPdb(): >> TITLE    3 STRUCTURAL GENOMICS CONSORTIUM TARGET SGR209C                        
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

 ReadCoordsPdb(): record with alternate data 'ATOM    217  N  BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    219  CA BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    221  C  BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    223  O  BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    225  CB BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    227  CG BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    229  CD BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    231  NE BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    233  CZ BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    235  NH1BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    237  NH2BARG A 292', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   2351  CA BLYS C 283', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   2355  CB BLYS C 283', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   2357  CG BLYS C 283', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   2359  CD BLYS C 283', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   2361  CE BLYS C 283', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   2363  NZ BLYS C 283', discarding it
  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  4366 ATOM records read from file 
  > ReadCoordsPdb(): -->  4366 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     4366 (2789 C, 0 H, 805 O, 756 N, 0 S, 0 Q, 16 Metals)
  > INFO_mol: # residues:     538 (Avg. mol. weight: 107.7)
  > INFO_mol: # -- M.W. : 57919.8 g/mol. (57.92 kD)     Estimated RoG <S2>:  23.99 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 538
  > INFO_mol: Radius of Gyration <S2> :    28.2595  angstroms 
  > INFO_mol: Center of Masses: x_cm(1.640), y_cm(29.443), z_cm(60.309) 

  > INFO_res:  QKYAKPGLSA LEKNAVIKAA YRQIFERDIT KAYSQSISYL ESQVRNGDIS 
  > INFO_res:  KEFVRRLAKS PLYRKQFFEP FINSRALELA FRHILGRGPS SREEVQKYFS 
  > INFO_res:  IVSSGGLPAL VDALVDSQEY ADYFGEETVP YLRRQKYAKP GLSALEKNAV 
  > INFO_res:  IKAAYRQIFE RDITKAYSQS ISYLESQVRN GDISKEFVRR LAKSPLYRKQ 
  > INFO_res:  FFEPFINSRA LELAFRHILG RGPSSREEVQ KYFSIVSSGG LPALVDALVD 
  > INFO_res:  SQEYADYFGE ETVPYLRQKY AKPGLSALEK NAVIKAAYRQ IFERDIYSQS 
  > INFO_res:  ISYLESQVRN GDISKEFVRR LAKSPLYRKQ FFEPFINSRA LELAFRHILG 
  > INFO_res:  RGPSSREEVQ KYFSIVSSGG LPALVDALVD SQEYADYFGE ETVPYLRQKY 
  > INFO_res:  AKPGLSALEK NAVIKAAYRQ IFERDITKAY SQSISYLESQ VRNGDISKEF 
  > INFO_res:  VRRLAKSPLY RKQFFEPFIN SRALELAFRH ILGRGPSSRE EVQKYFSIVS 
  > INFO_res:  SGGLPALVDA LVDSQEYADY FGEETVPYLR 
  > INFO_res:  
  > INFO_res:  GLN  LYS  TYR  ALA  MSE  LYS  PRO  GLY  LEU  SER  ALA  LEU  
  > INFO_res:  GLU  LYS  ASN  ALA  VAL  ILE  LYS  ALA  ALA  TYR  ARG  GLN  
  > INFO_res:  ILE  PHE  GLU  ARG  ASP  ILE  THR  LYS  ALA  TYR  SER  GLN  
  > INFO_res:  SER  ILE  SER  TYR  LEU  GLU  SER  GLN  VAL  ARG  ASN  GLY  
  > INFO_res:  ASP  ILE  SER  MSE  LYS  GLU  PHE  VAL  ARG  ARG  LEU  ALA  
  > INFO_res:  LYS  SER  PRO  LEU  TYR  ARG  LYS  GLN  PHE  PHE  GLU  PRO  
  > INFO_res:  PHE  ILE  ASN  SER  ARG  ALA  LEU  GLU  LEU  ALA  PHE  ARG  
  > INFO_res:  HIS  ILE  LEU  GLY  ARG  GLY  PRO  SER  SER  ARG  GLU  GLU  
  > INFO_res:  VAL  GLN  LYS  TYR  PHE  SER  ILE  VAL  SER  SER  GLY  GLY  
  > INFO_res:  LEU  PRO  ALA  LEU  VAL  ASP  ALA  LEU  VAL  ASP  SER  GLN  
  > INFO_res:  GLU  TYR  ALA  ASP  TYR  PHE  GLY  GLU  GLU  THR  VAL  PRO  
  > INFO_res:  TYR  LEU  ARG  ARG  GLN  LYS  TYR  ALA  MSE  LYS  PRO  GLY  
  > INFO_res:  LEU  SER  ALA  LEU  GLU  LYS  ASN  ALA  VAL  ILE  LYS  ALA  
  > INFO_res:  ALA  TYR  ARG  GLN  ILE  PHE  GLU  ARG  ASP  ILE  THR  LYS  
  > INFO_res:  ALA  TYR  SER  GLN  SER  ILE  SER  TYR  LEU  GLU  SER  GLN  
  > INFO_res:  VAL  ARG  ASN  GLY  ASP  ILE  SER  MSE  LYS  GLU  PHE  VAL  
  > INFO_res:  ARG  ARG  LEU  ALA  LYS  SER  PRO  LEU  TYR  ARG  LYS  GLN  
  > INFO_res:  PHE  PHE  GLU  PRO  PHE  ILE  ASN  SER  ARG  ALA  LEU  GLU  
  > INFO_res:  LEU  ALA  PHE  ARG  HIS  ILE  LEU  GLY  ARG  GLY  PRO  SER  
  > INFO_res:  SER  ARG  GLU  GLU  VAL  GLN  LYS  TYR  PHE  SER  ILE  VAL  
  > INFO_res:  SER  SER  GLY  GLY  LEU  PRO  ALA  LEU  VAL  ASP  ALA  LEU  
  > INFO_res:  VAL  ASP  SER  GLN  GLU  TYR  ALA  ASP  TYR  PHE  GLY  GLU  
  > INFO_res:  GLU  THR  VAL  PRO  TYR  LEU  ARG  GLN  LYS  TYR  ALA  MSE  
  > INFO_res:  LYS  PRO  GLY  LEU  SER  ALA  LEU  GLU  LYS  ASN  ALA  VAL  
  > INFO_res:  ILE  LYS  ALA  ALA  TYR  ARG  GLN  ILE  PHE  GLU  ARG  ASP  
  > INFO_res:  ILE  TYR  SER  GLN  SER  ILE  SER  TYR  LEU  GLU  SER  GLN  
  > INFO_res:  VAL  ARG  ASN  GLY  ASP  ILE  SER  MSE  LYS  GLU  PHE  VAL  
  > INFO_res:  ARG  ARG  LEU  ALA  LYS  SER  PRO  LEU  TYR  ARG  LYS  GLN  
  > INFO_res:  PHE  PHE  GLU  PRO  PHE  ILE  ASN  SER  ARG  ALA  LEU  GLU  
  > INFO_res:  LEU  ALA  PHE  ARG  HIS  ILE  LEU  GLY  ARG  GLY  PRO  SER  
  > INFO_res:  SER  ARG  GLU  GLU  VAL  GLN  LYS  TYR  PHE  SER  ILE  VAL  
  > INFO_res:  SER  SER  GLY  GLY  LEU  PRO  ALA  LEU  VAL  ASP  ALA  LEU  
  > INFO_res:  VAL  ASP  SER  GLN  GLU  TYR  ALA  ASP  TYR  PHE  GLY  GLU  
  > INFO_res:  GLU  THR  VAL  PRO  TYR  LEU  ARG  GLN  LYS  TYR  ALA  MSE  
  > INFO_res:  LYS  PRO  GLY  LEU  SER  ALA  LEU  GLU  LYS  ASN  ALA  VAL  
  > INFO_res:  ILE  LYS  ALA  ALA  TYR  ARG  GLN  ILE  PHE  GLU  ARG  ASP  
  > INFO_res:  ILE  THR  LYS  ALA  TYR  SER  GLN  SER  ILE  SER  TYR  LEU  
  > INFO_res:  GLU  SER  GLN  VAL  ARG  ASN  GLY  ASP  ILE  SER  MSE  LYS  
  > INFO_res:  GLU  PHE  VAL  ARG  ARG  LEU  ALA  LYS  SER  PRO  LEU  TYR  
  > INFO_res:  ARG  LYS  GLN  PHE  PHE  GLU  PRO  PHE  ILE  ASN  SER  ARG  
  > INFO_res:  ALA  LEU  GLU  LEU  ALA  PHE  ARG  HIS  ILE  LEU  GLY  ARG  
  > INFO_res:  GLY  PRO  SER  SER  ARG  GLU  GLU  VAL  GLN  LYS  TYR  PHE  
  > INFO_res:  SER  ILE  VAL  SER  SER  GLY  GLY  LEU  PRO  ALA  LEU  VAL  
  > INFO_res:  ASP  ALA  LEU  VAL  ASP  SER  GLN  GLU  TYR  ALA  ASP  TYR  
  > INFO_res:  PHE  GLY  GLU  GLU  THR  VAL  PRO  TYR  LEU  ARG  
  > INFO_res:  
  > INFO_res:  47 ALA    45 ARG    12 ASN    20 ASP    28 GLN    44 GLU  
  > INFO_res:  28 GLY     4 HIS    32 ILE    48 LEU    35 LYS    32 PHE  
  > INFO_res:  24 PRO    56 SER     7 THR    36 TYR    32 VAL     8 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 4 [4] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...