read coor pdb SGR209C_R3Cons_em_bcr3.pdb
all
rmsd coor heavy 14A-18A,20A-38A,48A-78A,82A-99A,102A-143A
ave
resOrd_rmsd_heavy
rmsd coor backbone 14A-18A,20A-38A,48A-78A,82A-99A,102A-143A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit