PyMOL>load ./SGR209C_NMR_em_bcr3.pdb.iupac
HEADER    PROTEIN BINDING                         30-JUN-10   2L06
TITLE     SOLUTION NMR STRUCTURE OF THE PBS LINKER POLYPEPTIDE DOMAIN (FRAGMENT
TITLE    2 254-400) OF PHYCOBILISOME LINKER PROTEIN APCE FROM SYNECHOCYSTIS SP.
TITLE    3 PCC 6803. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SGR209C
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: PHYCOBILISOME LCM CORE-MEMBRANE LINKER POLYPEPTIDE;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: SEQUENCE DATABASE RESIDUES 254-401;
COMPND   5 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./SGR209C_NMR_em_bcr3.pdb.iupac" loaded as "SGR209C_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 2517 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color17, [0, 165, 255]
 Color: "color17" defined as [ 0.000, 0.647, 1.000 ].
PyMOL>color color17, resi 17
 Executive: Colored 22 atoms.
PyMOL>set_color color20, [0, 63, 255]
 Color: "color20" defined as [ 0.000, 0.247, 1.000 ].
PyMOL>color color20, resi 20
 Executive: Colored 19 atoms.
PyMOL>set_color color25, [0, 159, 255]
 Color: "color25" defined as [ 0.000, 0.624, 1.000 ].
PyMOL>color color25, resi 25
 Executive: Colored 22 atoms.
PyMOL>set_color color29, [0, 200, 255]
 Color: "color29" defined as [ 0.000, 0.784, 1.000 ].
PyMOL>color color29, resi 29
 Executive: Colored 19 atoms.
PyMOL>set_color color33, [0, 255, 152]
 Color: "color33" defined as [ 0.000, 1.000, 0.596 ].
PyMOL>color color33, resi 33
 Executive: Colored 21 atoms.
PyMOL>set_color color36, [0, 255, 250]
 Color: "color36" defined as [ 0.000, 1.000, 0.980 ].
PyMOL>color color36, resi 36
 Executive: Colored 19 atoms.
PyMOL>set_color color37, [255, 140, 0]
 Color: "color37" defined as [ 1.000, 0.549, 0.000 ].
PyMOL>color color37, resi 37
 Executive: Colored 20 atoms.
PyMOL>show sticks, res 37
PyMOL>set_color color41, [0, 19, 255]
 Color: "color41" defined as [ 0.000, 0.075, 1.000 ].
PyMOL>color color41, resi 41
 Executive: Colored 19 atoms.
PyMOL>set_color color49, [0, 38, 255]
 Color: "color49" defined as [ 0.000, 0.149, 1.000 ].
PyMOL>color color49, resi 49
 Executive: Colored 19 atoms.
PyMOL>set_color color51, [0, 144, 255]
 Color: "color51" defined as [ 0.000, 0.565, 1.000 ].
PyMOL>color color51, resi 51
 Executive: Colored 21 atoms.
PyMOL>set_color color52, [0, 103, 255]
 Color: "color52" defined as [ 0.000, 0.404, 1.000 ].
PyMOL>color color52, resi 52
 Executive: Colored 19 atoms.
PyMOL>set_color color53, [0, 90, 255]
 Color: "color53" defined as [ 0.000, 0.353, 1.000 ].
PyMOL>color color53, resi 53
 Executive: Colored 15 atoms.
PyMOL>set_color color57, [0, 100, 255]
 Color: "color57" defined as [ 0.000, 0.392, 1.000 ].
PyMOL>color color57, resi 57
 Executive: Colored 24 atoms.
PyMOL>set_color color63, [0, 54, 255]
 Color: "color63" defined as [ 0.000, 0.212, 1.000 ].
PyMOL>color color63, resi 63
 Executive: Colored 17 atoms.
PyMOL>set_color color65, [0, 252, 255]
 Color: "color65" defined as [ 0.000, 0.988, 1.000 ].
PyMOL>color color65, resi 65
 Executive: Colored 15 atoms.
PyMOL>set_color color66, [0, 255, 229]
 Color: "color66" defined as [ 0.000, 1.000, 0.898 ].
PyMOL>color color66, resi 66
 Executive: Colored 20 atoms.
PyMOL>set_color color68, [0, 200, 255]
 Color: "color68" defined as [ 0.000, 0.784, 1.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 24 atoms.
PyMOL>set_color color70, [255, 206, 0]
 Color: "color70" defined as [ 1.000, 0.808, 0.000 ].
PyMOL>color color70, resi 70
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 70
PyMOL>set_color color75, [0, 98, 255]
 Color: "color75" defined as [ 0.000, 0.384, 1.000 ].
PyMOL>color color75, resi 75
 Executive: Colored 19 atoms.
PyMOL>set_color color76, [0, 162, 255]
 Color: "color76" defined as [ 0.000, 0.635, 1.000 ].
PyMOL>color color76, resi 76
 Executive: Colored 21 atoms.
PyMOL>set_color color77, [0, 74, 255]
 Color: "color77" defined as [ 0.000, 0.290, 1.000 ].
PyMOL>color color77, resi 77
 Executive: Colored 24 atoms.
PyMOL>set_color color81, [0, 84, 255]
 Color: "color81" defined as [ 0.000, 0.329, 1.000 ].
PyMOL>color color81, resi 81
 Executive: Colored 20 atoms.
PyMOL>set_color color82, [0, 68, 255]
 Color: "color82" defined as [ 0.000, 0.267, 1.000 ].
PyMOL>color color82, resi 82
 Executive: Colored 15 atoms.
PyMOL>set_color color83, [0, 55, 255]
 Color: "color83" defined as [ 0.000, 0.216, 1.000 ].
PyMOL>color color83, resi 83
 Executive: Colored 14 atoms.
PyMOL>set_color color85, [0, 7, 255]
 Color: "color85" defined as [ 0.000, 0.027, 1.000 ].
PyMOL>color color85, resi 85
 Executive: Colored 19 atoms.
PyMOL>set_color color87, [0, 96, 255]
 Color: "color87" defined as [ 0.000, 0.376, 1.000 ].
PyMOL>color color87, resi 87
 Executive: Colored 11 atoms.
PyMOL>set_color color90, [0, 115, 255]
 Color: "color90" defined as [ 0.000, 0.451, 1.000 ].
PyMOL>color color90, resi 90
 Executive: Colored 19 atoms.
PyMOL>set_color color94, [0, 255, 101]
 Color: "color94" defined as [ 0.000, 1.000, 0.396 ].
PyMOL>color color94, resi 94
 Executive: Colored 20 atoms.
PyMOL>set_color color97, [0, 5, 255]
 Color: "color97" defined as [ 0.000, 0.020, 1.000 ].
PyMOL>color color97, resi 97
 Executive: Colored 19 atoms.
PyMOL>set_color color98, [0, 71, 255]
 Color: "color98" defined as [ 0.000, 0.278, 1.000 ].
PyMOL>color color98, resi 98
 Executive: Colored 19 atoms.
PyMOL>set_color color111, [0, 255, 204]
 Color: "color111" defined as [ 0.000, 1.000, 0.800 ].
PyMOL>color color111, resi 111
 Executive: Colored 21 atoms.
PyMOL>set_color color112, [0, 39, 255]
 Color: "color112" defined as [ 0.000, 0.153, 1.000 ].
PyMOL>color color112, resi 112
 Executive: Colored 20 atoms.
PyMOL>set_color color114, [0, 108, 255]
 Color: "color114" defined as [ 0.000, 0.424, 1.000 ].
PyMOL>color color114, resi 114
 Executive: Colored 19 atoms.
PyMOL>set_color color120, [0, 24, 255]
 Color: "color120" defined as [ 0.000, 0.094, 1.000 ].
PyMOL>color color120, resi 120
 Executive: Colored 19 atoms.
PyMOL>set_color color121, [0, 73, 255]
 Color: "color121" defined as [ 0.000, 0.286, 1.000 ].
PyMOL>color color121, resi 121
 Executive: Colored 14 atoms.
PyMOL>set_color color123, [0, 255, 214]
 Color: "color123" defined as [ 0.000, 1.000, 0.839 ].
PyMOL>color color123, resi 123
 Executive: Colored 19 atoms.
PyMOL>set_color color127, [0, 51, 255]
 Color: "color127" defined as [ 0.000, 0.200, 1.000 ].
PyMOL>color color127, resi 127
 Executive: Colored 19 atoms.
PyMOL>set_color color142, [0, 78, 255]
 Color: "color142" defined as [ 0.000, 0.306, 1.000 ].
PyMOL>color color142, resi 142
 Executive: Colored 16 atoms.
PyMOL>set_color color144, [0, 88, 255]
 Color: "color144" defined as [ 0.000, 0.345, 1.000 ].
PyMOL>color color144, resi 144
 Executive: Colored 21 atoms.
PyMOL>label 37/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 70/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.93 sec. = 3869.0 frames/hour (0.93 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit