Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   31-MAR-10   3MER              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE METHYLTRANSFERASE SLR1183 FROM               
  > ReadCoordsPdb(): >> TITLE    2 SYNECHOCYSTIS SP. PCC 6803, NORTHEAST STRUCTURAL GENOMICS            
  > ReadCoordsPdb(): >> TITLE    3 CONSORTIUM TARGET SGR145                                             
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  2656 ATOM records read from file 
  > ReadCoordsPdb(): -->  2656 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     2656 (1700 C, 0 H, 506 O, 444 N, 6 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:     346 (Avg. mol. weight: 100.9)
  > INFO_mol: # -- M.W. : 34924.6 g/mol. (34.92 kD)     Estimated RoG <S2>:  20.29 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 346
  > INFO_mol: Radius of Gyration <S2> :    23.2855  angstroms 
  > INFO_mol: Center of Masses: x_cm(-0.006), y_cm(2.253), z_cm(4.879) 

  > INFO_res:  EPNDFLVSVA NQIPQGKILC LAEGEGRNAC FLASLGYEVT AVDQSSVGLA 
  > INFO_res:  KAKQLAQEKG VKITTVQSNL ADFDIVADAW EGIVSIFCHL PSSLRQQLYP 
  > INFO_res:  KVYQGLKPGG VFILEGFAPE QLQYNTGGPK DLDLLPKLET LQSELPSLNW 
  > INFO_res:  LIANNLERNK AALIQLLGQK LEHEPNDFLV SVANQIPQGK ILCLAEGEGR 
  > INFO_res:  NACFLASLGY EVTAVDQSSV GLAKAKQLAQ EKGVKITTVQ SNLADFDIVA 
  > INFO_res:  DAWEGIVSIF CHLPSSLRQQ LYPKVYQGLK PGGVFILEGF APEQLQYNTG 
  > INFO_res:  GPKDLDLLPK LETLQSELPS LNWLIANNLE RNKAALIQLL GQKLEH
  > INFO_res:  
  > INFO_res:  GLU  PRO  ASN  ASP  PHE  LEU  VAL  SER  VAL  ALA  ASN  GLN  
  > INFO_res:  ILE  PRO  GLN  GLY  LYS  ILE  LEU  CYS  LEU  ALA  GLU  GLY  
  > INFO_res:  GLU  GLY  ARG  ASN  ALA  CYS  PHE  LEU  ALA  SER  LEU  GLY  
  > INFO_res:  TYR  GLU  VAL  THR  ALA  VAL  ASP  GLN  SER  SER  VAL  GLY  
  > INFO_res:  LEU  ALA  LYS  ALA  LYS  GLN  LEU  ALA  GLN  GLU  LYS  GLY  
  > INFO_res:  VAL  LYS  ILE  THR  THR  VAL  GLN  SER  ASN  LEU  ALA  ASP  
  > INFO_res:  PHE  ASP  ILE  VAL  ALA  ASP  ALA  TRP  GLU  GLY  ILE  VAL  
  > INFO_res:  SER  ILE  PHE  CYS  HIS  LEU  PRO  SER  SER  LEU  ARG  GLN  
  > INFO_res:  GLN  LEU  TYR  PRO  LYS  VAL  TYR  GLN  GLY  LEU  LYS  PRO  
  > INFO_res:  GLY  GLY  VAL  PHE  ILE  LEU  GLU  GLY  PHE  ALA  PRO  GLU  
  > INFO_res:  GLN  LEU  GLN  TYR  ASN  THR  GLY  GLY  PRO  LYS  ASP  LEU  
  > INFO_res:  ASP  LEU  LEU  PRO  LYS  LEU  GLU  THR  LEU  GLN  SER  GLU  
  > INFO_res:  LEU  PRO  SER  LEU  ASN  TRP  LEU  ILE  ALA  ASN  ASN  LEU  
  > INFO_res:  GLU  ARG  ASN  LYS  ALA  ALA  LEU  ILE  GLN  LEU  LEU  GLY  
  > INFO_res:  GLN  LYS  LEU  GLU  HIS  GLU  PRO  ASN  ASP  PHE  LEU  VAL  
  > INFO_res:  SER  VAL  ALA  ASN  GLN  ILE  PRO  GLN  GLY  LYS  ILE  LEU  
  > INFO_res:  CYS  LEU  ALA  GLU  GLY  GLU  GLY  ARG  ASN  ALA  CYS  PHE  
  > INFO_res:  LEU  ALA  SER  LEU  GLY  TYR  GLU  VAL  THR  ALA  VAL  ASP  
  > INFO_res:  GLN  SER  SER  VAL  GLY  LEU  ALA  LYS  ALA  LYS  GLN  LEU  
  > INFO_res:  ALA  GLN  GLU  LYS  GLY  VAL  LYS  ILE  THR  THR  VAL  GLN  
  > INFO_res:  SER  ASN  LEU  ALA  ASP  PHE  ASP  ILE  VAL  ALA  ASP  ALA  
  > INFO_res:  TRP  GLU  GLY  ILE  VAL  SER  ILE  PHE  CYS  HIS  LEU  PRO  
  > INFO_res:  SER  SER  LEU  ARG  GLN  GLN  LEU  TYR  PRO  LYS  VAL  TYR  
  > INFO_res:  GLN  GLY  LEU  LYS  PRO  GLY  GLY  VAL  PHE  ILE  LEU  GLU  
  > INFO_res:  GLY  PHE  ALA  PRO  GLU  GLN  LEU  GLN  TYR  ASN  THR  GLY  
  > INFO_res:  GLY  PRO  LYS  ASP  LEU  ASP  LEU  LEU  PRO  LYS  LEU  GLU  
  > INFO_res:  THR  LEU  GLN  SER  GLU  LEU  PRO  SER  LEU  ASN  TRP  LEU  
  > INFO_res:  ILE  ALA  ASN  ASN  LEU  GLU  ARG  ASN  LYS  ALA  ALA  LEU  
  > INFO_res:  ILE  GLN  LEU  LEU  GLY  GLN  LYS  LEU  GLU  HIS  
  > INFO_res:  
  > INFO_res:  30 ALA     6 ARG    18 ASN    14 ASP     6 CYS    28 GLN  
  > INFO_res:  24 GLU    28 GLY     4 HIS    18 ILE    54 LEU    22 LYS  
  > INFO_res:  12 PHE    18 PRO    20 SER    10 THR     8 TYR     4 TRP  
  > INFO_res:  22 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 2 [2] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...