Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   30-APR-09   3H9X              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE PSPTO_3016 PROTEIN FROM                      
  > ReadCoordsPdb(): >> TITLE    2 PSEUDOMONAS SYRINGAE, NORTHEAST STRUCTURAL GENOMICS                  
  > ReadCoordsPdb(): >> TITLE    3 CONSORTIUM TARGET PSR293                                             
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  3884 ATOM records read from file 
  > ReadCoordsPdb(): -->  3884 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     3884 (2508 C, 0 H, 696 O, 668 N, 12 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:     468 (Avg. mol. weight: 109.0)
  > INFO_mol: # -- M.W. : 51000.2 g/mol. (51.00 kD)     Estimated RoG <S2>:  22.76 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 468
  > INFO_mol: Radius of Gyration <S2> :    29.0821  angstroms 
  > INFO_mol: Center of Masses: x_cm(27.995), y_cm(44.371), z_cm(58.260) 

  > INFO_res:  MNRQQFIDYA QKKYDTKPDH PWEKFPDYAV FRHSDNDKWY ALLMDIPAEK 
  > INFO_res:  IGINGDKRVD VIDLKVQPEL VGSLRKKPGI YPAYHMNKEH WITVLLNGPL 
  > INFO_res:  GAKEIHSLIE DSFQLTRMNR QQFIDYAQKK YDTKPDHPWE KFPDYAVFRH 
  > INFO_res:  SDNDKWYALL MDIPAEKIGI NGDKRVDVID LKVQPELVGS LRKKPGIYPA 
  > INFO_res:  YHMNKEHWIT VLLNGPLGAK EIHSLIEDSF QLTRMNRQQF IDYAQKKYDT 
  > INFO_res:  KPDHPWEKFP DYAVFRHSDN DKWYALLMDI PAEKIGINGD KRVDVIDLKV 
  > INFO_res:  QPELVGSLRK KPGIYPAYHM NKEHWITVLL NGPLGAKEIH SLIEDSFQLT 
  > INFO_res:  RMNRQQFIDY AQKKYDTKPD HPWEKFPDYA VFRHSDNDKW YALLMDIPAE 
  > INFO_res:  KIGINGDKRV DVIDLKVQPE LVGSLRKKPG IYPAYHMNKE HWITVLLNGP 
  > INFO_res:  LGAKEIHSLI EDSFQLTR
  > INFO_res:  
  > INFO_res:  MET  ASN  ARG  GLN  GLN  PHE  ILE  ASP  TYR  ALA  GLN  LYS  
  > INFO_res:  LYS  TYR  ASP  THR  LYS  PRO  ASP  HIS  PRO  TRP  GLU  LYS  
  > INFO_res:  PHE  PRO  ASP  TYR  ALA  VAL  PHE  ARG  HIS  SER  ASP  ASN  
  > INFO_res:  ASP  LYS  TRP  TYR  ALA  LEU  LEU  MET  ASP  ILE  PRO  ALA  
  > INFO_res:  GLU  LYS  ILE  GLY  ILE  ASN  GLY  ASP  LYS  ARG  VAL  ASP  
  > INFO_res:  VAL  ILE  ASP  LEU  LYS  VAL  GLN  PRO  GLU  LEU  VAL  GLY  
  > INFO_res:  SER  LEU  ARG  LYS  LYS  PRO  GLY  ILE  TYR  PRO  ALA  TYR  
  > INFO_res:  HIS  MET  ASN  LYS  GLU  HIS  TRP  ILE  THR  VAL  LEU  LEU  
  > INFO_res:  ASN  GLY  PRO  LEU  GLY  ALA  LYS  GLU  ILE  HIS  SER  LEU  
  > INFO_res:  ILE  GLU  ASP  SER  PHE  GLN  LEU  THR  ARG  MET  ASN  ARG  
  > INFO_res:  GLN  GLN  PHE  ILE  ASP  TYR  ALA  GLN  LYS  LYS  TYR  ASP  
  > INFO_res:  THR  LYS  PRO  ASP  HIS  PRO  TRP  GLU  LYS  PHE  PRO  ASP  
  > INFO_res:  TYR  ALA  VAL  PHE  ARG  HIS  SER  ASP  ASN  ASP  LYS  TRP  
  > INFO_res:  TYR  ALA  LEU  LEU  MET  ASP  ILE  PRO  ALA  GLU  LYS  ILE  
  > INFO_res:  GLY  ILE  ASN  GLY  ASP  LYS  ARG  VAL  ASP  VAL  ILE  ASP  
  > INFO_res:  LEU  LYS  VAL  GLN  PRO  GLU  LEU  VAL  GLY  SER  LEU  ARG  
  > INFO_res:  LYS  LYS  PRO  GLY  ILE  TYR  PRO  ALA  TYR  HIS  MET  ASN  
  > INFO_res:  LYS  GLU  HIS  TRP  ILE  THR  VAL  LEU  LEU  ASN  GLY  PRO  
  > INFO_res:  LEU  GLY  ALA  LYS  GLU  ILE  HIS  SER  LEU  ILE  GLU  ASP  
  > INFO_res:  SER  PHE  GLN  LEU  THR  ARG  MET  ASN  ARG  GLN  GLN  PHE  
  > INFO_res:  ILE  ASP  TYR  ALA  GLN  LYS  LYS  TYR  ASP  THR  LYS  PRO  
  > INFO_res:  ASP  HIS  PRO  TRP  GLU  LYS  PHE  PRO  ASP  TYR  ALA  VAL  
  > INFO_res:  PHE  ARG  HIS  SER  ASP  ASN  ASP  LYS  TRP  TYR  ALA  LEU  
  > INFO_res:  LEU  MET  ASP  ILE  PRO  ALA  GLU  LYS  ILE  GLY  ILE  ASN  
  > INFO_res:  GLY  ASP  LYS  ARG  VAL  ASP  VAL  ILE  ASP  LEU  LYS  VAL  
  > INFO_res:  GLN  PRO  GLU  LEU  VAL  GLY  SER  LEU  ARG  LYS  LYS  PRO  
  > INFO_res:  GLY  ILE  TYR  PRO  ALA  TYR  HIS  MET  ASN  LYS  GLU  HIS  
  > INFO_res:  TRP  ILE  THR  VAL  LEU  LEU  ASN  GLY  PRO  LEU  GLY  ALA  
  > INFO_res:  LYS  GLU  ILE  HIS  SER  LEU  ILE  GLU  ASP  SER  PHE  GLN  
  > INFO_res:  LEU  THR  ARG  MET  ASN  ARG  GLN  GLN  PHE  ILE  ASP  TYR  
  > INFO_res:  ALA  GLN  LYS  LYS  TYR  ASP  THR  LYS  PRO  ASP  HIS  PRO  
  > INFO_res:  TRP  GLU  LYS  PHE  PRO  ASP  TYR  ALA  VAL  PHE  ARG  HIS  
  > INFO_res:  SER  ASP  ASN  ASP  LYS  TRP  TYR  ALA  LEU  LEU  MET  ASP  
  > INFO_res:  ILE  PRO  ALA  GLU  LYS  ILE  GLY  ILE  ASN  GLY  ASP  LYS  
  > INFO_res:  ARG  VAL  ASP  VAL  ILE  ASP  LEU  LYS  VAL  GLN  PRO  GLU  
  > INFO_res:  LEU  VAL  GLY  SER  LEU  ARG  LYS  LYS  PRO  GLY  ILE  TYR  
  > INFO_res:  PRO  ALA  TYR  HIS  MET  ASN  LYS  GLU  HIS  TRP  ILE  THR  
  > INFO_res:  VAL  LEU  LEU  ASN  GLY  PRO  LEU  GLY  ALA  LYS  GLU  ILE  
  > INFO_res:  HIS  SER  LEU  ILE  GLU  ASP  SER  PHE  GLN  LEU  THR  ARG  
  > INFO_res:  
  > INFO_res:  
  > INFO_res:  24 ALA    20 ARG    20 ASN    44 ASP    20 GLN    24 GLU  
  > INFO_res:  24 GLY    20 HIS    36 ILE    40 LEU    48 LYS    12 MET  
  > INFO_res:  16 PHE    32 PRO    16 SER    12 THR    24 TYR    12 TRP  
  > INFO_res:  24 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 4 [4] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...