read coor pdb PSR293_R3_em_bcr3.pdb
all
rmsd coor heavy 2A-18A,20A-36A,40A-53A,57A-83A,90A-99A,102A-117A
ave
resOrd_rmsd_heavy
rmsd coor backbone 2A-18A,20A-36A,40A-53A,57A-83A,90A-99A,102A-117A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit