read coor pdb PSR293_R3Cons_em_bcr3.pdb all rmsd coor heavy 2A-36A,40A-53A,57A-83A,90A-99A,101A-116A ave resSel_rmsd_heavy rmsd coor backbone 2A-36A,40A-53A,57A-83A,90A-99A,101A-116A ave resSel_rmsd_bb write selSi.pdb coor all all pdb quit