Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total2719
intra-residue [i = j]523
sequential [| i - j | = 1]686
medium range [1 < | i - j | < 5]271
long range [| i - j | ≥ 5]1239
NOE constraints per restrained residue b25.2
Dihedral-angle constraints:166
Total number of restricting constraints b2885
Total number of restricting constraints per restrained residue b26.7
Restricting long-range constraints per restrained residue b11.5
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å4.7
0.2 - 0.5 Å4
> 0.5 Å0.05
RMS of distance violation / constraint0.02 Å
Maximum distance violation d0.60 Å
Dihedral angle violations / structure
1 - 10 °1.95
> 10 °1
RMS of dihedral angle violation / constraint1.33 °
Maximum dihedral angle violation d18.00 °
RPF scores
RecallPrecisionF-measureDP-score
0.9710.9490.9590.878
RMSD Values
allorderedeSelectedf
All backbone atoms0.3 Å0.3 Å0.3 Å
All heavy atoms0.6 Å0.5 Å0.5 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.26N/A-0.71
Procheck G-factor e (all dihedral angles)-0.02N/A-0.12
Verify3D0.390.0222-1.12
ProsaII (-ve)0.380.0277-1.12
MolProbity clashscore4.181.07840.81
General linear model RMSD prediction1.20
Ramachandran Plot Summary from Procheck f
Most favoured regions95.1%
Additionally allowed regions4.9%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions99%
Allowed regions1%
Disallowed regions0%


a Analysed for residues 1 to 108
b There are 108 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 2A-107A
f Residues selected based on: User defined residues

Selected residue ranges: 2A-107A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4