PyMOL>load ./OR8C_XRay_em_bcr3_noHs_H.pdb,obj
HEADER    VIRAL PROTEIN/NUCLEAR PROTEIN           09-OCT-07   2RHK
TITLE     CRYSTAL STRUCTURE OF INFLUENZA A NS1A PROTEIN IN COMPLEX
TITLE    2 WITH F2F3 FRAGMENT OF HUMAN CELLULAR FACTOR CPSF30,
TITLE    3 NORTHEAST STRUCTURAL GENOMICS TARGETS OR8C AND HR6309A
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: NON-STRUCTURAL PROTEIN 1;
COMPND   3 CHAIN: A, B;
COMPND   4 FRAGMENT: NS1A EFFECTOR DOMAIN (UNP RESIDUES 85-215);
COMPND   5 SYNONYM: NS1, NS1A;
COMPND   6 ENGINEERED: YES;
COMPND   7 MOL_ID: 2;
COMPND   8 MOLECULE: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR
COMPND   9 SUBUNIT 4;
COMPND   0 CHAIN: C, D;
COMPND   1 FRAGMENT: F2F3 ZINC-BINDING DOMAINS (UNP RESIDUES 61-121);
COMPND   2 SYNONYM: CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30
COMPND   3 KDA SUBUNIT, CPSF 30 KDA SUBUNIT, NS1 EFFECTOR DOMAIN-
COMPND   4 BINDING PROTEIN 1, NEB-1, NO ARCHES HOMOLOG, F2F3 ZINC-
COMPND   5 BINDING DOMAINS;
COMPND   6 ENGINEERED: YES;
COMPND   7 MUTATION: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 4 symmetry operators.
 CmdLoad: "./OR8C_XRay_em_bcr3_noHs_H.pdb" loaded as "obj".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color red, ss h
 Executive: Colored 1236 atoms.
PyMOL>color cyan,ss s
 Executive: Colored 886 atoms.
PyMOL>color gray,ss ""+l
 Executive: Colored 3659 atoms.
PyMOL>set cartoon_highlight_color,yellow
 Setting: cartoon_highlight_color set to yellow.
PyMOL>orient
PyMOL>set ray_trace_mode, 3
 Setting: ray_trace_mode set to 3.
PyMOL>set antialias, 2
 Setting: antialias set to 2.
PyMOL>ray 600,600
 Ray: render time: 3.30 sec. = 1090.1 frames/hour (3.30 sec. accum.).
PyMOL>png molecule.png
 ScenePNG: wrote 600x600 pixel image to file "molecule.png".
PyMOL>set stereo,1
 Setting: stereo set to on.
PyMOL>stereo walleye
 Setting: stereo_mode set to 3.
PyMOL>select bb,n. c+ca+n
 Selector: selection "bb" defined with 1083 atoms.
PyMOL>hide everything,all
PyMOL>show lines,bb
PyMOL>color blue,bb
 Executive: Colored 1083 atoms.
PyMOL>set line_width,2
 Setting: line_width set to 2.00000.
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>zoom complete=1
PyMOL>set ray_trace_mode, 0
 Setting: ray_trace_mode set to 0.
PyMOL>ray 1200,600
 Ray: render time: 1.23 sec. = 2934.0 frames/hour (4.53 sec. accum.).
PyMOL>png stereo.png
 ScenePNG: wrote 1200x600 pixel image to file "stereo.png".
PyMOL>quit