Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    VIRAL PROTEIN/NUCLEAR PROTEIN           09-OCT-07   2RHK              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF INFLUENZA A NS1A PROTEIN IN COMPLEX              
  > ReadCoordsPdb(): >> TITLE    2 WITH F2F3 FRAGMENT OF HUMAN CELLULAR FACTOR CPSF30,                  
  > ReadCoordsPdb(): >> TITLE    3 NORTHEAST STRUCTURAL GENOMICS TARGETS OR8C AND HR6309A               
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  2911 ATOM records read from file 
  > ReadCoordsPdb(): -->  2911 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     2911 (1863 C, 0 H, 531 O, 487 N, 30 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:     361 (Avg. mol. weight: 107.1)
  > INFO_mol: # -- M.W. : 38654.5 g/mol. (38.65 kD)     Estimated RoG <S2>:  20.62 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 361
  > INFO_mol: Radius of Gyration <S2> :    24.0388  angstroms 
  > INFO_mol: Center of Masses: x_cm(-6.715), y_cm(19.007), z_cm(-0.072) 

  > INFO_res:  PASRYITDMT IEELSRDWFM LMPKQKVEGP LCIRIDQAIM DKNIMLKANF 
  > INFO_res:  SVIFDRLETL ILLRAFTEEG AIVGEISPLP SFPGHTIEDV KNAIGVLIGG 
  > INFO_res:  LEWNDNTVRV SKTLQRFAWP ASRYITDMTI EELSRDWFML MPKQKVEGPL 
  > INFO_res:  CIRIDQAIMD KNIMLKANFS VIFDRLETLI LLRAFTEEGA IVGEISPLPS 
  > INFO_res:  FPGHTIEDVK NAIGVLIGGL EWNDNTVRVS KTLQRFAWHH SHMSGEKTVV 
  > INFO_res:  CKHWLRGLCK KGDQCEFLHE YDMTKMSECY FYSKFGECSN KECPFLHIDP 
  > INFO_res:  ESHMSGEKTV VCKHWLRGLC KKGDQCEFLH EYDMTKMSEC YFYSKFGECS 
  > INFO_res:  NKECPFLHID P
  > INFO_res:  
  > INFO_res:  PRO  ALA  SER  ARG  TYR  ILE  THR  ASP  MET  THR  ILE  GLU  
  > INFO_res:  GLU  LEU  SER  ARG  ASP  TRP  PHE  MET  LEU  MET  PRO  LYS  
  > INFO_res:  GLN  LYS  VAL  GLU  GLY  PRO  LEU  CYS  ILE  ARG  ILE  ASP  
  > INFO_res:  GLN  ALA  ILE  MET  ASP  LYS  ASN  ILE  MET  LEU  LYS  ALA  
  > INFO_res:  ASN  PHE  SER  VAL  ILE  PHE  ASP  ARG  LEU  GLU  THR  LEU  
  > INFO_res:  ILE  LEU  LEU  ARG  ALA  PHE  THR  GLU  GLU  GLY  ALA  ILE  
  > INFO_res:  VAL  GLY  GLU  ILE  SER  PRO  LEU  PRO  SER  PHE  PRO  GLY  
  > INFO_res:  HIS  THR  ILE  GLU  ASP  VAL  LYS  ASN  ALA  ILE  GLY  VAL  
  > INFO_res:  LEU  ILE  GLY  GLY  LEU  GLU  TRP  ASN  ASP  ASN  THR  VAL  
  > INFO_res:  ARG  VAL  SER  LYS  THR  LEU  GLN  ARG  PHE  ALA  TRP  PRO  
  > INFO_res:  ALA  SER  ARG  TYR  ILE  THR  ASP  MET  THR  ILE  GLU  GLU  
  > INFO_res:  LEU  SER  ARG  ASP  TRP  PHE  MET  LEU  MET  PRO  LYS  GLN  
  > INFO_res:  LYS  VAL  GLU  GLY  PRO  LEU  CYS  ILE  ARG  ILE  ASP  GLN  
  > INFO_res:  ALA  ILE  MET  ASP  LYS  ASN  ILE  MET  LEU  LYS  ALA  ASN  
  > INFO_res:  PHE  SER  VAL  ILE  PHE  ASP  ARG  LEU  GLU  THR  LEU  ILE  
  > INFO_res:  LEU  LEU  ARG  ALA  PHE  THR  GLU  GLU  GLY  ALA  ILE  VAL  
  > INFO_res:  GLY  GLU  ILE  SER  PRO  LEU  PRO  SER  PHE  PRO  GLY  HIS  
  > INFO_res:  THR  ILE  GLU  ASP  VAL  LYS  ASN  ALA  ILE  GLY  VAL  LEU  
  > INFO_res:  ILE  GLY  GLY  LEU  GLU  TRP  ASN  ASP  ASN  THR  VAL  ARG  
  > INFO_res:  VAL  SER  LYS  THR  LEU  GLN  ARG  PHE  ALA  TRP  HIS  HIS  
  > INFO_res:  SER  HIS  MET  SER  GLY  GLU  LYS  THR  VAL  VAL  CYS  LYS  
  > INFO_res:  HIS  TRP  LEU  ARG  GLY  LEU  CYS  LYS  LYS  GLY  ASP  GLN  
  > INFO_res:  CYS  GLU  PHE  LEU  HIS  GLU  TYR  ASP  MET  THR  LYS  MET  
  > INFO_res:  SER  GLU  CYS  TYR  PHE  TYR  SER  LYS  PHE  GLY  GLU  CYS  
  > INFO_res:  SER  ASN  LYS  GLU  CYS  PRO  PHE  LEU  HIS  ILE  ASP  PRO  
  > INFO_res:  GLU  SER  HIS  MET  SER  GLY  GLU  LYS  THR  VAL  VAL  CYS  
  > INFO_res:  LYS  HIS  TRP  LEU  ARG  GLY  LEU  CYS  LYS  LYS  GLY  ASP  
  > INFO_res:  GLN  CYS  GLU  PHE  LEU  HIS  GLU  TYR  ASP  MET  THR  LYS  
  > INFO_res:  MET  SER  GLU  CYS  TYR  PHE  TYR  SER  LYS  PHE  GLY  GLU  
  > INFO_res:  CYS  SER  ASN  LYS  GLU  CYS  PRO  PHE  LEU  HIS  ILE  ASP  
  > INFO_res:  PRO  
  > INFO_res:  
  > INFO_res:  14 ALA    16 ARG    12 ASN    20 ASP    14 CYS     8 GLN  
  > INFO_res:  31 GLU    22 GLY    12 HIS    28 ILE    32 LEU    26 LYS  
  > INFO_res:  16 MET    20 PHE    16 PRO    22 SER    18 THR     8 TYR  
  > INFO_res:   8 TRP    18 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 4 [4] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...