PyMOL>load ./OR8C_NMR_em_bcr3.pdb.iupac
HEADER    ANTIVIRAL PROTEIN                       29-JUN-09   2KKZ
TITLE     SOLUTION NMR STRUCTURE OF THE MONOMERIC W187R MUTANT OF
TITLE    2 A/UDORN NS1 EFFECTOR DOMAIN. NORTHEAST STRUCTURAL GENOMICS
TITLE    3 TARGET OR8C[W187R].
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: NON-STRUCTURAL PROTEIN NS1;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: SEQUENCE DATABASE RESIDUES 85-215;
COMPND   5 ENGINEERED: YES;
COMPND   6 MUTATION: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./OR8C_NMR_em_bcr3.pdb.iupac" loaded as "OR8C_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 2137 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color2, [0, 53, 255]
 Color: "color2" defined as [ 0.000, 0.208, 1.000 ].
PyMOL>color color2, resi 2
 Executive: Colored 14 atoms.
PyMOL>set_color color5, [0, 132, 255]
 Color: "color5" defined as [ 0.000, 0.518, 1.000 ].
PyMOL>color color5, resi 5
 Executive: Colored 24 atoms.
PyMOL>set_color color7, [0, 255, 156]
 Color: "color7" defined as [ 0.000, 1.000, 0.612 ].
PyMOL>color color7, resi 7
 Executive: Colored 19 atoms.
PyMOL>set_color color9, [0, 157, 255]
 Color: "color9" defined as [ 0.000, 0.616, 1.000 ].
PyMOL>color color9, resi 9
 Executive: Colored 12 atoms.
PyMOL>set_color color10, [0, 170, 255]
 Color: "color10" defined as [ 0.000, 0.667, 1.000 ].
PyMOL>color color10, resi 10
 Executive: Colored 17 atoms.
PyMOL>set_color color14, [0, 10, 255]
 Color: "color14" defined as [ 0.000, 0.039, 1.000 ].
PyMOL>color color14, resi 14
 Executive: Colored 15 atoms.
PyMOL>set_color color15, [0, 3, 255]
 Color: "color15" defined as [ 0.000, 0.012, 1.000 ].
PyMOL>color color15, resi 15
 Executive: Colored 19 atoms.
PyMOL>set_color color17, [0, 50, 255]
 Color: "color17" defined as [ 0.000, 0.196, 1.000 ].
PyMOL>color color17, resi 17
 Executive: Colored 24 atoms.
PyMOL>set_color color19, [0, 255, 112]
 Color: "color19" defined as [ 0.000, 1.000, 0.439 ].
PyMOL>color color19, resi 19
 Executive: Colored 24 atoms.
PyMOL>set_color color20, [0, 66, 255]
 Color: "color20" defined as [ 0.000, 0.259, 1.000 ].
PyMOL>color color20, resi 20
 Executive: Colored 20 atoms.
PyMOL>set_color color21, [0, 24, 255]
 Color: "color21" defined as [ 0.000, 0.094, 1.000 ].
PyMOL>color color21, resi 21
 Executive: Colored 17 atoms.
PyMOL>set_color color22, [0, 69, 255]
 Color: "color22" defined as [ 0.000, 0.271, 1.000 ].
PyMOL>color color22, resi 22
 Executive: Colored 19 atoms.
PyMOL>set_color color25, [0, 32, 255]
 Color: "color25" defined as [ 0.000, 0.125, 1.000 ].
PyMOL>color color25, resi 25
 Executive: Colored 22 atoms.
PyMOL>set_color color29, [0, 51, 255]
 Color: "color29" defined as [ 0.000, 0.200, 1.000 ].
PyMOL>color color29, resi 29
 Executive: Colored 15 atoms.
PyMOL>set_color color31, [0, 245, 255]
 Color: "color31" defined as [ 0.000, 0.961, 1.000 ].
PyMOL>color color31, resi 31
 Executive: Colored 14 atoms.
PyMOL>set_color color32, [18, 255, 0]
 Color: "color32" defined as [ 0.071, 1.000, 0.000 ].
PyMOL>color color32, resi 32
 Executive: Colored 19 atoms.
PyMOL>set_color color34, [0, 143, 255]
 Color: "color34" defined as [ 0.000, 0.561, 1.000 ].
PyMOL>color color34, resi 34
 Executive: Colored 19 atoms.
PyMOL>set_color color35, [11, 255, 0]
 Color: "color35" defined as [ 0.043, 1.000, 0.000 ].
PyMOL>color color35, resi 35
 Executive: Colored 24 atoms.
PyMOL>set_color color36, [0, 219, 255]
 Color: "color36" defined as [ 0.000, 0.859, 1.000 ].
PyMOL>color color36, resi 36
 Executive: Colored 19 atoms.
PyMOL>set_color color37, [0, 160, 255]
 Color: "color37" defined as [ 0.000, 0.627, 1.000 ].
PyMOL>color color37, resi 37
 Executive: Colored 12 atoms.
PyMOL>set_color color40, [0, 10, 255]
 Color: "color40" defined as [ 0.000, 0.039, 1.000 ].
PyMOL>color color40, resi 40
 Executive: Colored 19 atoms.
PyMOL>set_color color43, [0, 228, 255]
 Color: "color43" defined as [ 0.000, 0.894, 1.000 ].
PyMOL>color color43, resi 43
 Executive: Colored 22 atoms.
PyMOL>set_color color45, [0, 25, 255]
 Color: "color45" defined as [ 0.000, 0.098, 1.000 ].
PyMOL>color color45, resi 45
 Executive: Colored 19 atoms.
PyMOL>set_color color47, [0, 255, 56]
 Color: "color47" defined as [ 0.000, 1.000, 0.220 ].
PyMOL>color color47, resi 47
 Executive: Colored 19 atoms.
PyMOL>set_color color48, [0, 255, 55]
 Color: "color48" defined as [ 0.000, 1.000, 0.216 ].
PyMOL>color color48, resi 48
 Executive: Colored 22 atoms.
PyMOL>set_color color49, [0, 179, 255]
 Color: "color49" defined as [ 0.000, 0.702, 1.000 ].
PyMOL>color color49, resi 49
 Executive: Colored 10 atoms.
PyMOL>set_color color50, [0, 110, 255]
 Color: "color50" defined as [ 0.000, 0.431, 1.000 ].
PyMOL>color color50, resi 50
 Executive: Colored 14 atoms.
PyMOL>set_color color51, [255, 230, 0]
 Color: "color51" defined as [ 1.000, 0.902, 0.000 ].
PyMOL>color color51, resi 51
 Executive: Colored 20 atoms.
PyMOL>show sticks, res 51
PyMOL>set_color color53, [0, 11, 255]
 Color: "color53" defined as [ 0.000, 0.043, 1.000 ].
PyMOL>color color53, resi 53
 Executive: Colored 16 atoms.
PyMOL>set_color color57, [0, 35, 255]
 Color: "color57" defined as [ 0.000, 0.137, 1.000 ].
PyMOL>color color57, resi 57
 Executive: Colored 24 atoms.
PyMOL>set_color color58, [255, 253, 0]
 Color: "color58" defined as [ 1.000, 0.992, 0.000 ].
PyMOL>color color58, resi 58
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 58
PyMOL>set_color color61, [0, 255, 226]
 Color: "color61" defined as [ 0.000, 1.000, 0.886 ].
PyMOL>color color61, resi 61
 Executive: Colored 19 atoms.
PyMOL>set_color color62, [0, 106, 255]
 Color: "color62" defined as [ 0.000, 0.416, 1.000 ].
PyMOL>color color62, resi 62
 Executive: Colored 19 atoms.
PyMOL>set_color color63, [0, 8, 255]
 Color: "color63" defined as [ 0.000, 0.031, 1.000 ].
PyMOL>color color63, resi 63
 Executive: Colored 19 atoms.
PyMOL>set_color color64, [0, 132, 255]
 Color: "color64" defined as [ 0.000, 0.518, 1.000 ].
PyMOL>color color64, resi 64
 Executive: Colored 19 atoms.
PyMOL>set_color color65, [0, 255, 218]
 Color: "color65" defined as [ 0.000, 1.000, 0.855 ].
PyMOL>color color65, resi 65
 Executive: Colored 24 atoms.
PyMOL>set_color color67, [0, 255, 11]
 Color: "color67" defined as [ 0.000, 1.000, 0.043 ].
PyMOL>color color67, resi 67
 Executive: Colored 20 atoms.
PyMOL>set_color color68, [0, 244, 255]
 Color: "color68" defined as [ 0.000, 0.957, 1.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 14 atoms.
PyMOL>set_color color70, [0, 3, 255]
 Color: "color70" defined as [ 0.000, 0.012, 1.000 ].
PyMOL>color color70, resi 70
 Executive: Colored 15 atoms.
PyMOL>set_color color73, [40, 255, 0]
 Color: "color73" defined as [ 0.157, 1.000, 0.000 ].
PyMOL>color color73, resi 73
 Executive: Colored 19 atoms.
PyMOL>set_color color74, [0, 215, 255]
 Color: "color74" defined as [ 0.000, 0.843, 1.000 ].
PyMOL>color color74, resi 74
 Executive: Colored 16 atoms.
PyMOL>set_color color76, [133, 255, 0]
 Color: "color76" defined as [ 0.522, 1.000, 0.000 ].
PyMOL>color color76, resi 76
 Executive: Colored 15 atoms.
PyMOL>set_color color77, [0, 212, 255]
 Color: "color77" defined as [ 0.000, 0.831, 1.000 ].
PyMOL>color color77, resi 77
 Executive: Colored 19 atoms.
PyMOL>set_color color79, [55, 255, 0]
 Color: "color79" defined as [ 0.216, 1.000, 0.000 ].
PyMOL>color color79, resi 79
 Executive: Colored 14 atoms.
PyMOL>set_color color80, [0, 20, 255]
 Color: "color80" defined as [ 0.000, 0.078, 1.000 ].
PyMOL>color color80, resi 80
 Executive: Colored 19 atoms.
PyMOL>set_color color89, [0, 39, 255]
 Color: "color89" defined as [ 0.000, 0.153, 1.000 ].
PyMOL>color color89, resi 89
 Executive: Colored 15 atoms.
PyMOL>set_color color91, [255, 217, 0]
 Color: "color91" defined as [ 1.000, 0.851, 0.000 ].
PyMOL>color color91, resi 91
 Executive: Colored 16 atoms.
PyMOL>show sticks, res 91
PyMOL>set_color color92, [0, 3, 255]
 Color: "color92" defined as [ 0.000, 0.012, 1.000 ].
PyMOL>color color92, resi 92
 Executive: Colored 22 atoms.
PyMOL>set_color color94, [0, 2, 255]
 Color: "color94" defined as [ 0.000, 0.008, 1.000 ].
PyMOL>color color94, resi 94
 Executive: Colored 10 atoms.
PyMOL>set_color color95, [255, 0, 0]
 Color: "color95" defined as [ 1.000, 0.000, 0.000 ].
PyMOL>color color95, resi 95
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 95
PyMOL>set_color color98, [0, 200, 255]
 Color: "color98" defined as [ 0.000, 0.784, 1.000 ].
PyMOL>color color98, resi 98
 Executive: Colored 19 atoms.
PyMOL>set_color color99, [255, 236, 0]
 Color: "color99" defined as [ 1.000, 0.925, 0.000 ].
PyMOL>color color99, resi 99
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 99
PyMOL>set_color color101, [0, 4, 255]
 Color: "color101" defined as [ 0.000, 0.016, 1.000 ].
PyMOL>color color101, resi 101
 Executive: Colored 7 atoms.
PyMOL>set_color color102, [0, 247, 255]
 Color: "color102" defined as [ 0.000, 0.969, 1.000 ].
PyMOL>color color102, resi 102
 Executive: Colored 19 atoms.
PyMOL>set_color color103, [0, 40, 255]
 Color: "color103" defined as [ 0.000, 0.157, 1.000 ].
PyMOL>color color103, resi 103
 Executive: Colored 15 atoms.
PyMOL>set_color color105, [0, 205, 255]
 Color: "color105" defined as [ 0.000, 0.804, 1.000 ].
PyMOL>color color105, resi 105
 Executive: Colored 14 atoms.
PyMOL>set_color color109, [0, 169, 255]
 Color: "color109" defined as [ 0.000, 0.663, 1.000 ].
PyMOL>color color109, resi 109
 Executive: Colored 16 atoms.
PyMOL>set_color color111, [255, 80, 0]
 Color: "color111" defined as [ 1.000, 0.314, 0.000 ].
PyMOL>color color111, resi 111
 Executive: Colored 16 atoms.
PyMOL>show sticks, res 111
PyMOL>set_color color112, [146, 255, 0]
 Color: "color112" defined as [ 0.573, 1.000, 0.000 ].
PyMOL>color color112, resi 112
 Executive: Colored 11 atoms.
PyMOL>set_color color113, [0, 177, 255]
 Color: "color113" defined as [ 0.000, 0.694, 1.000 ].
PyMOL>color color113, resi 113
 Executive: Colored 22 atoms.
PyMOL>set_color color114, [0, 2, 255]
 Color: "color114" defined as [ 0.000, 0.008, 1.000 ].
PyMOL>color color114, resi 114
 Executive: Colored 14 atoms.
PyMOL>set_color color115, [255, 249, 0]
 Color: "color115" defined as [ 1.000, 0.976, 0.000 ].
PyMOL>color color115, resi 115
 Executive: Colored 19 atoms.
PyMOL>show sticks, res 115
PyMOL>set_color color116, [0, 255, 176]
 Color: "color116" defined as [ 0.000, 1.000, 0.690 ].
PyMOL>color color116, resi 116
 Executive: Colored 17 atoms.
PyMOL>set_color color118, [137, 255, 0]
 Color: "color118" defined as [ 0.537, 1.000, 0.000 ].
PyMOL>color color118, resi 118
 Executive: Colored 20 atoms.
PyMOL>set_color color119, [0, 64, 255]
 Color: "color119" defined as [ 0.000, 0.251, 1.000 ].
PyMOL>color color119, resi 119
 Executive: Colored 10 atoms.
PyMOL>set_color color120, [255, 109, 0]
 Color: "color120" defined as [ 1.000, 0.427, 0.000 ].
PyMOL>color color120, resi 120
 Executive: Colored 24 atoms.
PyMOL>show sticks, res 120
PyMOL>label 51/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 58/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 91/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 95/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 99/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 111/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 115/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>label 120/ca,"%s" %(resi)
 Label: labelled 1 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.80 sec. = 4491.5 frames/hour (0.80 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit