Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total2261
intra-residue [i = j]615
sequential [| i - j | = 1]620
medium range [1 < | i - j | < 5]297
long range [| i - j | ≥ 5]729
NOE constraints per restrained residue b17.0
Dihedral-angle constraints:203
Total number of restricting constraints b2464
Total number of restricting constraints per restrained residue b18.5
Restricting long-range constraints per restrained residue b5.5
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å9.7
0.2 - 0.5 Å2.5
> 0.5 Å0
RMS of distance violation / constraint0.02 Å
Maximum distance violation d0.33 Å
Dihedral angle violations / structure
1 - 10 °7.75
> 10 °0
RMS of dihedral angle violation / constraint0.46 °
Maximum dihedral angle violation d5.30 °
RPF scores
RecallPrecisionF-measureDP-score
0.9730.8830.9260.749
RMSD Values
allorderedeSelectedf
All backbone atoms5.4 Å4.1 Å4.1 Å
All heavy atoms5.6 Å4.0 Å4.0 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.46N/A-1.49
Procheck G-factor e (all dihedral angles)-0.31N/A-1.83
Verify3D0.340.0240-1.93
ProsaII (-ve)0.410.0523-0.99
MolProbity clashscore17.272.5282-1.44
General linear model RMSD prediction2.14
Ramachandran Plot Summary from Procheck f
Most favoured regions87.9%
Additionally allowed regions12.1%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions96.4%
Allowed regions3.6%
Disallowed regions0%


a Analysed for residues 1 to 134
b There are 133 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 4A-80A,86A-119A,129A-132A
f Residues selected based on: User defined residues

Selected residue ranges: 4A-80A,86A-119A,129A-132A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4