read coor pdb MRR110B_R3_em_bcr3.pdb
all
rmsd coor heavy 1A-35A,37A-78A,83A-93A
ave
resOrd_rmsd_heavy
rmsd coor backbone 1A-35A,37A-78A,83A-93A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit