Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    TRANSCRIPTION REGULATOR                 31-MAR-09   3GW2              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN      
  > ReadCoordsPdb(): >> TITLE    2 (FRAGMENT 1-100) FROM MYCOBACTERIUM BOVIS. NORTHEAST STRUCTURAL      
  > ReadCoordsPdb(): >> TITLE    3 GENOMICS CONSORTIUM TARGET MBR242E.                                  
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

 ReadCoordsPdb(): record with alternate data 'ATOM    548  CA BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    552  CB BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    554  CG BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    556  CD BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    558  NE BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    560  CZ BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    562  NH1BARG A  80', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    564  NH2BARG A  80', discarding it
  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->   697 ATOM records read from file 
  > ReadCoordsPdb(): -->   697 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:      697 (429 C, 0 H, 131 O, 135 N, 0 S, 0 Q, 2 Metals)
  > INFO_mol: # residues:      93 (Avg. mol. weight: 99.6)
  > INFO_mol: # -- M.W. :  9258.5 g/mol. (9.26 kD)     Estimated RoG <S2>:  12.32 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 93
  > INFO_mol: Radius of Gyration <S2> :    13.8294  angstroms 
  > INFO_mol: Center of Masses: x_cm(29.187), y_cm(29.741), z_cm(28.545) 

  > INFO_res:  RKAALLDQVA RVGKALANGR RLQILDLLAQ GERAVEAIAT ATGNLTTASA 
  > INFO_res:  NLQALKSGGL VEARREGTRQ YYRIAGEDVA RLFALVQVVA DE
  > INFO_res:  
  > INFO_res:  ARG  LYS  ALA  ALA  LEU  LEU  ASP  GLN  VAL  ALA  ARG  VAL  
  > INFO_res:  GLY  LYS  ALA  LEU  ALA  ASN  GLY  ARG  ARG  LEU  GLN  ILE  
  > INFO_res:  LEU  ASP  LEU  LEU  ALA  GLN  GLY  GLU  ARG  ALA  VAL  GLU  
  > INFO_res:  ALA  ILE  ALA  THR  ALA  THR  GLY  MSE  ASN  LEU  THR  THR  
  > INFO_res:  ALA  SER  ALA  ASN  LEU  GLN  ALA  LEU  LYS  SER  GLY  GLY  
  > INFO_res:  LEU  VAL  GLU  ALA  ARG  ARG  GLU  GLY  THR  ARG  GLN  TYR  
  > INFO_res:  TYR  ARG  ILE  ALA  GLY  GLU  ASP  VAL  ALA  ARG  LEU  PHE  
  > INFO_res:  ALA  LEU  VAL  GLN  VAL  VAL  ALA  ASP  GLU  
  > INFO_res:  
  > INFO_res:  18 ALA    10 ARG     3 ASN     4 ASP     6 GLN     6 GLU  
  > INFO_res:   8 GLY     3 ILE    13 LEU     3 LYS     1 PHE     2 SER  
  > INFO_res:   5 THR     2 TYR     8 VAL     1 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** monomer, 1 [1] chains *** 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...