read coor pdb MBR242E_R3Cons_em_bcr3.pdb
all
rmsd coor heavy 7M-22M,26M-65M,68M-101M,125M-140M,144M-183M,186M-219M
ave
resOrd_rmsd_heavy
rmsd coor backbone 7M-22M,26M-65M,68M-101M,125M-140M,144M-183M,186M-219M
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit