Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.9

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2013 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.9-exp mar may 14 00:20:00 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `MBR242E_R3Cons_em_bcr3.pdb' opened for reading 
  > ReadCoordsPdb(): >> EXPDTA     NMR, 19 STRUCTURES
  > ReadCoordsPdb(): >> REMARK   PdbStat --  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  > ReadCoordsPdb(): >> REMARK   PdbStat --  PDB COORDINATES FOR TEMP_BCM_111.PDB, 18 MODEL/S  TEMP_BCM_111.PDB  
  > ReadCoordsPdb(): >> REMARK   PdbStat --  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  > ReadCoordsPdb(): >> SEQRES   1 A  108  MET ALA GLY GLN SER ASP ARG LYS ALA ALA LEU LEU ASP 
  > ReadCoordsPdb(): Counting models in file `MBR242E_R3Cons_em_bcr3.pdb'; Model: 
  > ReadCoordsPdb(): After scanning there is(are) 18 model(s) 
  > ReadCoordsPdb(): what model do you want [(1 to 18) or all] ?_   > ReadCoordsPdb(): Reading *all* models in file MBR242E_R3Cons_em_bcr3.pdb
  > ReadCoordsPdb(): Reading a total of (18) models in file
  > ReadCoordsPdb(): I'm reading!, model   0

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): --> 59652 ATOM records read from file
  > ReadCoordsPdb(): --> 59652 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > ReadCoordsPdb(): ** monomer, 1 [1] chains ** 


PdbStat>   > RMSD_coords : Reference structure (1-18) or (average) ?_    > do_average_coords(): Making average for heavy atoms 
  > do_average_coords(): Calculating center of masses 
  > do_average_coords(): Calling optimal rotation for heavy onto model  1 
  > do_average_coords(): Calc. average coordinates heavy 
  > RMSD_coords : File name for RMSDs (def. `rmsd.pdbstat')?_ : 

 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  1 is: 1.288
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  2 is: 1.150
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  3 is: 1.140
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  4 is: 1.181
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  5 is: 0.974
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  6 is: 0.829 (*)
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  7 is: 0.848
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  8 is: 1.072
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  9 is: 1.035
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 10 is: 0.983
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 11 is: 1.078
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 12 is: 1.015
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 13 is: 0.956
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 14 is: 0.977
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 15 is: 0.981
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 16 is: 1.256
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 17 is: 1.177
 > Kabsch RMSD of heavy atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 18 is: 1.037
 >
 > Kabsch RMSD statistics for 18 structures: 
 > Mean RMSD using as refer. str. `average' for res.[7..22],[26..65],[68..101],[125..140],[144..218], is: 1.054 
 > Range of RMSD values to reference struct. is 0.829 to 1.288

PdbStat>   > RMSD_coords : Reference structure (1-18) or (average) ?_    > do_average_coords(): Making average for backbone atoms 
  > do_average_coords(): Calculating center of masses 
  > do_average_coords(): Calling optimal rotation for backbone onto model  1 
  > do_average_coords(): Calc. average coordinates backbone 
  > RMSD_coords : File name for RMSDs (def. `rmsd.pdbstat')?_ : 

 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  1 is: 0.982
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  2 is: 0.834
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  3 is: 0.862
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  4 is: 0.857
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  5 is: 0.683
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  6 is: 0.483
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  7 is: 0.470 (*)
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  8 is: 0.758
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model  9 is: 0.745
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 10 is: 0.619
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 11 is: 0.775
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 12 is: 0.825
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 13 is: 0.660
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 14 is: 0.653
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 15 is: 0.755
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 16 is: 0.788
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 17 is: 0.897
 > Kabsch RMSD of backbone atoms in res. *[7..22],*[26..65],*[68..101],*[125..140],*[144..218],for model 18 is: 0.668
 >
 > Kabsch RMSD statistics for 18 structures: 
 > Mean RMSD using as refer. str. `average' for res.[7..22],[26..65],[68..101],[125..140],[144..218], is: 0.740 
 > Range of RMSD values to reference struct. is 0.470 to 0.982

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > WRITER: What model ?_ :   > WRITER:  --  All models to be written 
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 

PdbStat> 
PdbStat>  *END* of program detected, BYE! ...