PyMOL>load ./MBR242E_NMR_em_bcr3.pdb.iupac
HEADER    DNA BINDING PROTEIN                     26-JUN-09   2KKO
TITLE     SOLUTION NMR STRUCTURE OF THE HOMODIMERIC WINGED HELIX-TURN-
TITLE    2 HELIX DNA-BINDING DOMAIN (FRAGMENT 1-100) MB0332 FROM
TITLE    3 MYCOBACTERIUM BOVIS, A POSSIBLE ARSR-FAMILY TRANSCRIPTIONAL
TITLE    4 REGULATOR. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET
TITLE    5 MBR242E.
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN
COMPND   3 (POSSIBLY ARSR-FAMILY);
COMPND   4 CHAIN: A, B;
COMPND   5 FRAGMENT: HTH ARSR-TYPE DNA BINDING DOMAIN RESIDUES 1-100;
COMPND   6 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./MBR242E_NMR_em_bcr3.pdb.iupac" loaded as "MBR242E_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 3328 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color12, [0, 226, 255]
 Color: "color12" defined as [ 0.000, 0.886, 1.000 ].
PyMOL>color color12, resi 12
 Executive: Colored 38 atoms.
PyMOL>set_color color15, [0, 243, 255]
 Color: "color15" defined as [ 0.000, 0.953, 1.000 ].
PyMOL>color color15, resi 15
 Executive: Colored 32 atoms.
PyMOL>set_color color22, [0, 134, 255]
 Color: "color22" defined as [ 0.000, 0.525, 1.000 ].
PyMOL>color color22, resi 22
 Executive: Colored 38 atoms.
PyMOL>set_color color28, [0, 255, 47]
 Color: "color28" defined as [ 0.000, 1.000, 0.184 ].
PyMOL>color color28, resi 28
 Executive: Colored 38 atoms.
PyMOL>set_color color30, [0, 255, 248]
 Color: "color30" defined as [ 0.000, 1.000, 0.973 ].
PyMOL>color color30, resi 30
 Executive: Colored 38 atoms.
PyMOL>set_color color31, [0, 233, 255]
 Color: "color31" defined as [ 0.000, 0.914, 1.000 ].
PyMOL>color color31, resi 31
 Executive: Colored 38 atoms.
PyMOL>set_color color34, [0, 255, 52]
 Color: "color34" defined as [ 0.000, 1.000, 0.204 ].
PyMOL>color color34, resi 34
 Executive: Colored 38 atoms.
PyMOL>set_color color38, [0, 48, 255]
 Color: "color38" defined as [ 0.000, 0.188, 1.000 ].
PyMOL>color color38, resi 38
 Executive: Colored 30 atoms.
PyMOL>set_color color39, [0, 30, 255]
 Color: "color39" defined as [ 0.000, 0.118, 1.000 ].
PyMOL>color color39, resi 39
 Executive: Colored 48 atoms.
PyMOL>set_color color40, [0, 22, 255]
 Color: "color40" defined as [ 0.000, 0.086, 1.000 ].
PyMOL>color color40, resi 40
 Executive: Colored 20 atoms.
PyMOL>set_color color44, [88, 255, 0]
 Color: "color44" defined as [ 0.345, 1.000, 0.000 ].
PyMOL>color color44, resi 44
 Executive: Colored 38 atoms.
PyMOL>set_color color45, [0, 255, 52]
 Color: "color45" defined as [ 0.000, 1.000, 0.204 ].
PyMOL>color color45, resi 45
 Executive: Colored 20 atoms.
PyMOL>set_color color48, [0, 12, 255]
 Color: "color48" defined as [ 0.000, 0.047, 1.000 ].
PyMOL>color color48, resi 48
 Executive: Colored 28 atoms.
PyMOL>set_color color50, [0, 32, 255]
 Color: "color50" defined as [ 0.000, 0.125, 1.000 ].
PyMOL>color color50, resi 50
 Executive: Colored 34 atoms.
PyMOL>set_color color52, [0, 255, 154]
 Color: "color52" defined as [ 0.000, 1.000, 0.604 ].
PyMOL>color color52, resi 52
 Executive: Colored 38 atoms.
PyMOL>set_color color54, [0, 3, 255]
 Color: "color54" defined as [ 0.000, 0.012, 1.000 ].
PyMOL>color color54, resi 54
 Executive: Colored 28 atoms.
PyMOL>set_color color59, [0, 99, 255]
 Color: "color59" defined as [ 0.000, 0.388, 1.000 ].
PyMOL>color color59, resi 59
 Executive: Colored 38 atoms.
PyMOL>set_color color67, [0, 147, 255]
 Color: "color67" defined as [ 0.000, 0.576, 1.000 ].
PyMOL>color color67, resi 67
 Executive: Colored 38 atoms.
PyMOL>set_color color68, [0, 15, 255]
 Color: "color68" defined as [ 0.000, 0.059, 1.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 32 atoms.
PyMOL>set_color color69, [0, 37, 255]
 Color: "color69" defined as [ 0.000, 0.145, 1.000 ].
PyMOL>color color69, resi 69
 Executive: Colored 30 atoms.
PyMOL>set_color color78, [0, 255, 169]
 Color: "color78" defined as [ 0.000, 1.000, 0.663 ].
PyMOL>color color78, resi 78
 Executive: Colored 42 atoms.
PyMOL>set_color color79, [0, 255, 228]
 Color: "color79" defined as [ 0.000, 1.000, 0.894 ].
PyMOL>color color79, resi 79
 Executive: Colored 42 atoms.
PyMOL>set_color color81, [0, 105, 255]
 Color: "color81" defined as [ 0.000, 0.412, 1.000 ].
PyMOL>color color81, resi 81
 Executive: Colored 38 atoms.
PyMOL>set_color color82, [0, 37, 255]
 Color: "color82" defined as [ 0.000, 0.145, 1.000 ].
PyMOL>color color82, resi 82
 Executive: Colored 20 atoms.
PyMOL>set_color color86, [0, 135, 255]
 Color: "color86" defined as [ 0.000, 0.529, 1.000 ].
PyMOL>color color86, resi 86
 Executive: Colored 32 atoms.
PyMOL>set_color color90, [0, 255, 79]
 Color: "color90" defined as [ 0.000, 1.000, 0.310 ].
PyMOL>color color90, resi 90
 Executive: Colored 40 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 1.75 sec. = 2059.4 frames/hour (1.75 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit