Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    STRUCTURAL GENOMICS, UNKNOWN FUNCTION   12-JAN-10   3LD7              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE LIN0431 PROTEIN FROM LISTERIA                
  > ReadCoordsPdb(): >> TITLE    2 INNOCUA, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET             
  > ReadCoordsPdb(): >> TITLE    3 LKR112                                                               
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

 ReadCoordsPdb(): record with alternate data 'ATOM     59  CA BSER A  47', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM     63  CB BSER A  47', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM     65  OG BSER A  47', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    698  CA BVAL B  43', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    702  CB BVAL B  43', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    704  CG1BVAL B  43', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    706  CG2BVAL B  43', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   1445  CA BILE C  53', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   1449  CB BILE C  53', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   1451  CG1BILE C  53', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   1453  CG2BILE C  53', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM   1455  CD1BILE C  53', discarding it
  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  2010 ATOM records read from file 
  > ReadCoordsPdb(): -->  2010 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     2010 (1256 C, 0 H, 381 O, 358 N, 3 S, 0 Q, 12 Metals)
  > INFO_mol: # residues:     261 (Avg. mol. weight: 103.5)
  > INFO_mol: # -- M.W. : 27005.6 g/mol. (27.01 kD)     Estimated RoG <S2>:  18.23 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 261
  > INFO_mol: Radius of Gyration <S2> :    21.0210  angstroms 
  > INFO_mol: Center of Masses: x_cm(42.561), y_cm(19.810), z_cm(17.756) 

  > INFO_res:  GDEVVAIISQ NGKVIREIPL TGHKGNEQFT IKGKGAQYNL EVDGERIRIK 
  > INFO_res:  EDNSPDQVGV KGWKSKAGDT IVCLPHKVFV EIKSTDEVVA IISQNGKVIR 
  > INFO_res:  EIPLTGHKGN EQFTIKGKGA QYNLEVDGER IRIKEDNSPD QVGVKGWKSK 
  > INFO_res:  AGDTIVCLPH KVFVEIKSTQ DEVVAIISQN GKVIREIPLT GHKGNEQFTI 
  > INFO_res:  KGKGAQYNLE VDGERIRIKE DNSPDQVGVK GWKSKAGDTI VCLPHKVFVE 
  > INFO_res:  IKSTQ
  > INFO_res:  
  > INFO_res:  GLY  ASP  GLU  VAL  VAL  ALA  ILE  ILE  SER  GLN  ASN  GLY  
  > INFO_res:  LYS  VAL  ILE  ARG  GLU  ILE  PRO  LEU  THR  GLY  HIS  LYS  
  > INFO_res:  GLY  ASN  GLU  GLN  PHE  THR  ILE  LYS  GLY  LYS  GLY  ALA  
  > INFO_res:  GLN  TYR  ASN  LEU  MSE  GLU  VAL  ASP  GLY  GLU  ARG  ILE  
  > INFO_res:  ARG  ILE  LYS  GLU  ASP  ASN  SER  PRO  ASP  GLN  VAL  GLY  
  > INFO_res:  VAL  LYS  MSE  GLY  TRP  LYS  SER  LYS  ALA  GLY  ASP  THR  
  > INFO_res:  ILE  VAL  CYS  LEU  PRO  HIS  LYS  VAL  PHE  VAL  GLU  ILE  
  > INFO_res:  LYS  SER  THR  ASP  GLU  VAL  VAL  ALA  ILE  ILE  SER  GLN  
  > INFO_res:  ASN  GLY  LYS  VAL  ILE  ARG  GLU  ILE  PRO  LEU  THR  GLY  
  > INFO_res:  HIS  LYS  GLY  ASN  GLU  GLN  PHE  THR  ILE  LYS  GLY  LYS  
  > INFO_res:  GLY  ALA  GLN  TYR  ASN  LEU  MSE  GLU  VAL  ASP  GLY  GLU  
  > INFO_res:  ARG  ILE  ARG  ILE  LYS  GLU  ASP  ASN  SER  PRO  ASP  GLN  
  > INFO_res:  VAL  GLY  VAL  LYS  MSE  GLY  TRP  LYS  SER  LYS  ALA  GLY  
  > INFO_res:  ASP  THR  ILE  VAL  CYS  LEU  PRO  HIS  LYS  VAL  PHE  VAL  
  > INFO_res:  GLU  ILE  LYS  SER  THR  GLN  ASP  GLU  VAL  VAL  ALA  ILE  
  > INFO_res:  ILE  SER  GLN  ASN  GLY  LYS  VAL  ILE  ARG  GLU  ILE  PRO  
  > INFO_res:  LEU  THR  GLY  HIS  LYS  GLY  ASN  GLU  GLN  PHE  THR  ILE  
  > INFO_res:  LYS  GLY  LYS  GLY  ALA  GLN  TYR  ASN  LEU  MSE  GLU  VAL  
  > INFO_res:  ASP  GLY  GLU  ARG  ILE  ARG  ILE  LYS  GLU  ASP  ASN  SER  
  > INFO_res:  PRO  ASP  GLN  VAL  GLY  VAL  LYS  MSE  GLY  TRP  LYS  SER  
  > INFO_res:  LYS  ALA  GLY  ASP  THR  ILE  VAL  CYS  LEU  PRO  HIS  LYS  
  > INFO_res:  VAL  PHE  VAL  GLU  ILE  LYS  SER  THR  GLN  
  > INFO_res:  
  > INFO_res:   9 ALA     9 ARG    12 ASN    15 ASP     3 CYS    14 GLN  
  > INFO_res:  21 GLU    28 GLY     6 HIS    27 ILE     9 LEU    30 LYS  
  > INFO_res:   6 PHE     9 PRO    12 SER    12 THR     3 TYR     3 TRP  
  > INFO_res:  27 VAL     6 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 3 [3] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...