Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total1499
intra-residue [i = j]201
sequential [| i - j | = 1]471
medium range [1 < | i - j | < 5]175
long range [| i - j | ≥ 5]652
NOE constraints per restrained residue b13.0
Dihedral-angle constraints:0
Total number of restricting constraints b1499
Total number of restricting constraints per restrained residue b13.0
Restricting long-range constraints per restrained residue b5.7
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å1.9
0.2 - 0.5 Å5.95
> 0.5 Å10.85
RMS of distance violation / constraint0.21 Å
Maximum distance violation d5.77 Å
RPF scores
RecallPrecisionF-measureDP-score
0.950.9330.9410.789
RMSD Values
allorderedeSelectedf
All backbone atoms3.9 Å0.8 Å0.8 Å
All heavy atoms4.2 Å1.2 Å1.2 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.51N/A-1.69
Procheck G-factor e (all dihedral angles)-0.07N/A-0.41
Verify3D0.400.0331-0.96
ProsaII (-ve)0.480.0596-0.70
MolProbity clashscore3.531.40390.92
General linear model RMSD prediction1.89
Ramachandran Plot Summary from Procheck f
Most favoured regions88.9%
Additionally allowed regions11.1%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions98.8%
Allowed regions1.2%
Disallowed regions0%


a Analysed for residues 1 to 122
b There are 115 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 15A-32A,34A-37A,42A-47A,53A-57A,60A-73A,75A-79A,85A-91A,100A-106A,108A-116A
f Residues selected based on: User defined residues

Selected residue ranges: 15A-32A,34A-37A,42A-47A,53A-72A,75A-79A,85A-91A,101A-106A,110A-116A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4