PyMOL>load ./HR5546A_NMR_em_bcr3.pdb.iupac
HEADER    STRUCTURAL PROTEIN                      21-OCT-09   2KPW
TITLE     NMR SOLUTION STRUCTURE OF LAMIN-B1 PROTEIN FROM HOMO
TITLE    2 SAPIENS: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM MEGA
TITLE    3 TARGET, HR5546A (439-549)
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: LAMIN-B1;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: SEQUENCE DATABASE RESIDUES 439-549;
COMPND   5 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./HR5546A_NMR_em_bcr3.pdb.iupac" loaded as "HR5546A_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 1898 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color17, [0, 167, 255]
 Color: "color17" defined as [ 0.000, 0.655, 1.000 ].
PyMOL>color color17, resi 17
 Executive: Colored 19 atoms.
PyMOL>set_color color18, [0, 61, 255]
 Color: "color18" defined as [ 0.000, 0.239, 1.000 ].
PyMOL>color color18, resi 18
 Executive: Colored 15 atoms.
PyMOL>set_color color19, [0, 25, 255]
 Color: "color19" defined as [ 0.000, 0.098, 1.000 ].
PyMOL>color color19, resi 19
 Executive: Colored 15 atoms.
PyMOL>set_color color20, [0, 255, 102]
 Color: "color20" defined as [ 0.000, 1.000, 0.400 ].
PyMOL>color color20, resi 20
 Executive: Colored 19 atoms.
PyMOL>set_color color25, [0, 201, 255]
 Color: "color25" defined as [ 0.000, 0.788, 1.000 ].
PyMOL>color color25, resi 25
 Executive: Colored 22 atoms.
PyMOL>set_color color26, [0, 255, 153]
 Color: "color26" defined as [ 0.000, 1.000, 0.600 ].
PyMOL>color color26, resi 26
 Executive: Colored 20 atoms.
PyMOL>set_color color27, [137, 255, 0]
 Color: "color27" defined as [ 0.537, 1.000, 0.000 ].
PyMOL>color color27, resi 27
 Executive: Colored 19 atoms.
PyMOL>set_color color28, [0, 255, 74]
 Color: "color28" defined as [ 0.000, 1.000, 0.290 ].
PyMOL>color color28, resi 28
 Executive: Colored 24 atoms.
PyMOL>set_color color29, [0, 53, 255]
 Color: "color29" defined as [ 0.000, 0.208, 1.000 ].
PyMOL>color color29, resi 29
 Executive: Colored 19 atoms.
PyMOL>set_color color30, [0, 189, 255]
 Color: "color30" defined as [ 0.000, 0.741, 1.000 ].
PyMOL>color color30, resi 30
 Executive: Colored 22 atoms.
PyMOL>set_color color31, [0, 75, 255]
 Color: "color31" defined as [ 0.000, 0.294, 1.000 ].
PyMOL>color color31, resi 31
 Executive: Colored 14 atoms.
PyMOL>set_color color33, [0, 94, 255]
 Color: "color33" defined as [ 0.000, 0.369, 1.000 ].
PyMOL>color color33, resi 33
 Executive: Colored 11 atoms.
PyMOL>set_color color39, [0, 44, 255]
 Color: "color39" defined as [ 0.000, 0.173, 1.000 ].
PyMOL>color color39, resi 39
 Executive: Colored 17 atoms.
PyMOL>set_color color42, [0, 165, 255]
 Color: "color42" defined as [ 0.000, 0.647, 1.000 ].
PyMOL>color color42, resi 42
 Executive: Colored 24 atoms.
PyMOL>set_color color43, [0, 203, 255]
 Color: "color43" defined as [ 0.000, 0.796, 1.000 ].
PyMOL>color color43, resi 43
 Executive: Colored 15 atoms.
PyMOL>set_color color44, [0, 5, 255]
 Color: "color44" defined as [ 0.000, 0.020, 1.000 ].
PyMOL>color color44, resi 44
 Executive: Colored 17 atoms.
PyMOL>set_color color46, [151, 255, 0]
 Color: "color46" defined as [ 0.592, 1.000, 0.000 ].
PyMOL>color color46, resi 46
 Executive: Colored 24 atoms.
PyMOL>set_color color48, [0, 93, 255]
 Color: "color48" defined as [ 0.000, 0.365, 1.000 ].
PyMOL>color color48, resi 48
 Executive: Colored 19 atoms.
PyMOL>set_color color55, [0, 103, 255]
 Color: "color55" defined as [ 0.000, 0.404, 1.000 ].
PyMOL>color color55, resi 55
 Executive: Colored 21 atoms.
PyMOL>set_color color56, [0, 63, 255]
 Color: "color56" defined as [ 0.000, 0.247, 1.000 ].
PyMOL>color color56, resi 56
 Executive: Colored 22 atoms.
PyMOL>set_color color57, [0, 255, 2]
 Color: "color57" defined as [ 0.000, 1.000, 0.008 ].
PyMOL>color color57, resi 57
 Executive: Colored 21 atoms.
PyMOL>set_color color63, [0, 255, 211]
 Color: "color63" defined as [ 0.000, 1.000, 0.827 ].
PyMOL>color color63, resi 63
 Executive: Colored 19 atoms.
PyMOL>set_color color67, [0, 178, 255]
 Color: "color67" defined as [ 0.000, 0.698, 1.000 ].
PyMOL>color color67, resi 67
 Executive: Colored 17 atoms.
PyMOL>set_color color68, [0, 205, 255]
 Color: "color68" defined as [ 0.000, 0.804, 1.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 14 atoms.
PyMOL>set_color color69, [0, 60, 255]
 Color: "color69" defined as [ 0.000, 0.235, 1.000 ].
PyMOL>color color69, resi 69
 Executive: Colored 16 atoms.
PyMOL>set_color color70, [0, 255, 152]
 Color: "color70" defined as [ 0.000, 1.000, 0.596 ].
PyMOL>color color70, resi 70
 Executive: Colored 14 atoms.
PyMOL>set_color color71, [0, 255, 107]
 Color: "color71" defined as [ 0.000, 1.000, 0.420 ].
PyMOL>color color71, resi 71
 Executive: Colored 19 atoms.
PyMOL>set_color color72, [0, 255, 118]
 Color: "color72" defined as [ 0.000, 1.000, 0.463 ].
PyMOL>color color72, resi 72
 Executive: Colored 24 atoms.
PyMOL>set_color color73, [0, 6, 255]
 Color: "color73" defined as [ 0.000, 0.024, 1.000 ].
PyMOL>color color73, resi 73
 Executive: Colored 10 atoms.
PyMOL>set_color color76, [0, 61, 255]
 Color: "color76" defined as [ 0.000, 0.239, 1.000 ].
PyMOL>color color76, resi 76
 Executive: Colored 10 atoms.
PyMOL>set_color color78, [0, 59, 255]
 Color: "color78" defined as [ 0.000, 0.231, 1.000 ].
PyMOL>color color78, resi 78
 Executive: Colored 16 atoms.
PyMOL>set_color color82, [0, 56, 255]
 Color: "color82" defined as [ 0.000, 0.220, 1.000 ].
PyMOL>color color82, resi 82
 Executive: Colored 14 atoms.
PyMOL>set_color color85, [0, 43, 255]
 Color: "color85" defined as [ 0.000, 0.169, 1.000 ].
PyMOL>color color85, resi 85
 Executive: Colored 12 atoms.
PyMOL>set_color color86, [0, 255, 199]
 Color: "color86" defined as [ 0.000, 1.000, 0.780 ].
PyMOL>color color86, resi 86
 Executive: Colored 19 atoms.
PyMOL>set_color color87, [66, 255, 0]
 Color: "color87" defined as [ 0.259, 1.000, 0.000 ].
PyMOL>color color87, resi 87
 Executive: Colored 19 atoms.
PyMOL>set_color color88, [0, 255, 139]
 Color: "color88" defined as [ 0.000, 1.000, 0.545 ].
PyMOL>color color88, resi 88
 Executive: Colored 24 atoms.
PyMOL>set_color color94, [0, 255, 217]
 Color: "color94" defined as [ 0.000, 1.000, 0.851 ].
PyMOL>color color94, resi 94
 Executive: Colored 24 atoms.
PyMOL>set_color color100, [0, 255, 249]
 Color: "color100" defined as [ 0.000, 1.000, 0.976 ].
PyMOL>color color100, resi 100
 Executive: Colored 16 atoms.
PyMOL>set_color color101, [0, 255, 99]
 Color: "color101" defined as [ 0.000, 1.000, 0.388 ].
PyMOL>color color101, resi 101
 Executive: Colored 22 atoms.
PyMOL>set_color color102, [0, 1, 255]
 Color: "color102" defined as [ 0.000, 0.004, 1.000 ].
PyMOL>color color102, resi 102
 Executive: Colored 16 atoms.
PyMOL>set_color color104, [0, 107, 255]
 Color: "color104" defined as [ 0.000, 0.420, 1.000 ].
PyMOL>color color104, resi 104
 Executive: Colored 19 atoms.
PyMOL>set_color color105, [0, 21, 255]
 Color: "color105" defined as [ 0.000, 0.082, 1.000 ].
PyMOL>color color105, resi 105
 Executive: Colored 22 atoms.
PyMOL>set_color color106, [0, 118, 255]
 Color: "color106" defined as [ 0.000, 0.463, 1.000 ].
PyMOL>color color106, resi 106
 Executive: Colored 14 atoms.
PyMOL>set_color color112, [0, 39, 255]
 Color: "color112" defined as [ 0.000, 0.153, 1.000 ].
PyMOL>color color112, resi 112
 Executive: Colored 16 atoms.
PyMOL>set_color color114, [0, 12, 255]
 Color: "color114" defined as [ 0.000, 0.047, 1.000 ].
PyMOL>color color114, resi 114
 Executive: Colored 17 atoms.
PyMOL>set_color color116, [0, 222, 255]
 Color: "color116" defined as [ 0.000, 0.871, 1.000 ].
PyMOL>color color116, resi 116
 Executive: Colored 11 atoms.
PyMOL>set_color color117, [0, 37, 255]
 Color: "color117" defined as [ 0.000, 0.145, 1.000 ].
PyMOL>color color117, resi 117
 Executive: Colored 14 atoms.
PyMOL>set_color color118, [0, 13, 255]
 Color: "color118" defined as [ 0.000, 0.051, 1.000 ].
PyMOL>color color118, resi 118
 Executive: Colored 16 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.53 sec. = 6817.1 frames/hour (0.53 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit