Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total1499
intra-residue [i = j]201
sequential [| i - j | = 1]471
medium range [1 < | i - j | < 5]175
long range [| i - j | ≥ 5]652
NOE constraints per restrained residue b13.0
Dihedral-angle constraints:0
Total number of restricting constraints b1499
Total number of restricting constraints per restrained residue b13.0
Restricting long-range constraints per restrained residue b5.7
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å0
0.2 - 0.5 Å0.05
> 0.5 Å0
RMS of distance violation / constraint0.00 Å
Maximum distance violation d0.47 Å
RPF scores
RecallPrecisionF-measureDP-score
0.9630.9280.9450.806
RMSD Values
allorderedeSelectedf
All backbone atoms2.8 Å0.7 Å0.7 Å
All heavy atoms3.1 Å1.1 Å1.1 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)-0.76N/A-2.68
Procheck G-factor e (all dihedral angles)-0.43N/A-2.54
Verify3D0.370.0271-1.44
ProsaII (-ve)0.430.0579-0.91
MolProbity clashscore20.093.5437-1.92
General linear model RMSD prediction2.12
Ramachandran Plot Summary from Procheck f
Most favoured regions83.1%
Additionally allowed regions16.9%
Generously allowed regions0.0%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions93.8%
Allowed regions6%
Disallowed regions0.1%


a Analysed for residues 1 to 122
b There are 115 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 15A-32A,34A-37A,42A-47A,53A-72A,75A-79A,85A-91A,101A-106A,110A-116A
f Residues selected based on: User defined residues

Selected residue ranges: 15A-32A,34A-37A,42A-47A,53A-72A,75A-79A,85A-91A,101A-106A,110A-116A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4