PyMOL>load ./HR4694F_NMR_em_bcr3.pdb.iupac
HEADER    TRANSFERASE                             30-JUN-10   2L05
TITLE     SOLUTION NMR STRUCTURE OF THE RAS-BINDING DOMAIN OF SERINE/THREONINE-
TITLE    2 PROTEIN KINASE B-RAF FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS
TITLE    3 CONSORTIUM TARGET HR4694F
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: RBD DOMAIN RESIDUES 149-232;
COMPND   5 SYNONYM: PROTO-ONCOGENE B-RAF, P94, V-RAF MURINE SARCOMA VIRAL
COMPND   6 ONCOGENE HOMOLOG B1;
COMPND   7 EC: 2.7.11.1;
COMPND   8 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolReadPDBStr: read MODEL 1
 ObjectMolReadPDBStr: read MODEL 2
 ObjectMolReadPDBStr: read MODEL 3
 ObjectMolReadPDBStr: read MODEL 4
 ObjectMolReadPDBStr: read MODEL 5
 ObjectMolReadPDBStr: read MODEL 6
 ObjectMolReadPDBStr: read MODEL 7
 ObjectMolReadPDBStr: read MODEL 8
 ObjectMolReadPDBStr: read MODEL 9
 ObjectMolReadPDBStr: read MODEL 10
 ObjectMolReadPDBStr: read MODEL 11
 ObjectMolReadPDBStr: read MODEL 12
 ObjectMolReadPDBStr: read MODEL 13
 ObjectMolReadPDBStr: read MODEL 14
 ObjectMolReadPDBStr: read MODEL 15
 ObjectMolReadPDBStr: read MODEL 16
 ObjectMolReadPDBStr: read MODEL 17
 ObjectMolReadPDBStr: read MODEL 18
 ObjectMolReadPDBStr: read MODEL 19
 ObjectMolReadPDBStr: read MODEL 20
 CmdLoad: "./HR4694F_NMR_em_bcr3.pdb.iupac" loaded as "HR4694F_NMR_em_bcr3.pdb.iupac".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 1398 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color10, [0, 33, 255]
 Color: "color10" defined as [ 0.000, 0.129, 1.000 ].
PyMOL>color color10, resi 10
 Executive: Colored 19 atoms.
PyMOL>set_color color12, [0, 255, 49]
 Color: "color12" defined as [ 0.000, 1.000, 0.192 ].
PyMOL>color color12, resi 12
 Executive: Colored 24 atoms.
PyMOL>set_color color14, [124, 255, 0]
 Color: "color14" defined as [ 0.486, 1.000, 0.000 ].
PyMOL>color color14, resi 14
 Executive: Colored 20 atoms.
PyMOL>set_color color15, [0, 255, 26]
 Color: "color15" defined as [ 0.000, 1.000, 0.102 ].
PyMOL>color color15, resi 15
 Executive: Colored 19 atoms.
PyMOL>set_color color20, [0, 255, 19]
 Color: "color20" defined as [ 0.000, 1.000, 0.075 ].
PyMOL>color color20, resi 20
 Executive: Colored 24 atoms.
PyMOL>set_color color21, [0, 255, 102]
 Color: "color21" defined as [ 0.000, 1.000, 0.400 ].
PyMOL>color color21, resi 21
 Executive: Colored 14 atoms.
PyMOL>set_color color22, [0, 255, 36]
 Color: "color22" defined as [ 0.000, 1.000, 0.141 ].
PyMOL>color color22, resi 22
 Executive: Colored 16 atoms.
PyMOL>set_color color26, [0, 62, 255]
 Color: "color26" defined as [ 0.000, 0.243, 1.000 ].
PyMOL>color color26, resi 26
 Executive: Colored 24 atoms.
PyMOL>set_color color30, [0, 40, 255]
 Color: "color30" defined as [ 0.000, 0.157, 1.000 ].
PyMOL>color color30, resi 30
 Executive: Colored 14 atoms.
PyMOL>set_color color31, [0, 83, 255]
 Color: "color31" defined as [ 0.000, 0.325, 1.000 ].
PyMOL>color color31, resi 31
 Executive: Colored 16 atoms.
PyMOL>set_color color32, [0, 11, 255]
 Color: "color32" defined as [ 0.000, 0.043, 1.000 ].
PyMOL>color color32, resi 32
 Executive: Colored 24 atoms.
PyMOL>set_color color35, [0, 178, 255]
 Color: "color35" defined as [ 0.000, 0.698, 1.000 ].
PyMOL>color color35, resi 35
 Executive: Colored 19 atoms.
PyMOL>set_color color39, [0, 80, 255]
 Color: "color39" defined as [ 0.000, 0.314, 1.000 ].
PyMOL>color color39, resi 39
 Executive: Colored 19 atoms.
PyMOL>set_color color46, [0, 112, 255]
 Color: "color46" defined as [ 0.000, 0.439, 1.000 ].
PyMOL>color color46, resi 46
 Executive: Colored 14 atoms.
PyMOL>set_color color48, [0, 124, 255]
 Color: "color48" defined as [ 0.000, 0.486, 1.000 ].
PyMOL>color color48, resi 48
 Executive: Colored 11 atoms.
PyMOL>set_color color51, [0, 94, 255]
 Color: "color51" defined as [ 0.000, 0.369, 1.000 ].
PyMOL>color color51, resi 51
 Executive: Colored 16 atoms.
PyMOL>set_color color52, [0, 249, 255]
 Color: "color52" defined as [ 0.000, 0.976, 1.000 ].
PyMOL>color color52, resi 52
 Executive: Colored 21 atoms.
PyMOL>set_color color64, [0, 255, 82]
 Color: "color64" defined as [ 0.000, 1.000, 0.322 ].
PyMOL>color color64, resi 64
 Executive: Colored 24 atoms.
PyMOL>set_color color68, [0, 32, 255]
 Color: "color68" defined as [ 0.000, 0.125, 1.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 19 atoms.
PyMOL>set_color color70, [0, 40, 255]
 Color: "color70" defined as [ 0.000, 0.157, 1.000 ].
PyMOL>color color70, resi 70
 Executive: Colored 24 atoms.
PyMOL>set_color color71, [0, 87, 255]
 Color: "color71" defined as [ 0.000, 0.341, 1.000 ].
PyMOL>color color71, resi 71
 Executive: Colored 19 atoms.
PyMOL>set_color color81, [0, 77, 255]
 Color: "color81" defined as [ 0.000, 0.302, 1.000 ].
PyMOL>color color81, resi 81
 Executive: Colored 19 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.47 sec. = 7619.4 frames/hour (0.47 sec. accum.).
PyMOL>png precision.png
 ScenePNG: wrote 800x800 pixel image to file "precision.png".
PyMOL>quit