PyMOL>load ./HR4435B_XRay_em_bcr3.pdb
HEADER    TRANSCRIPTION                           16-JUL-10   3NZL
TITLE     CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA-BINDING PROTEIN
TITLE    2 SATB1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM
TITLE    3 TARGET HR4435B
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: DNA-BINDING PROTEIN SATB1;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: SEQUENCE DATABASE RESIDUES 179-250;
COMPND   5 SYNONYM: SPECIAL AT-RICH SEQUENCE-BINDING PROTEIN 1;
COMPND   6 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 4 symmetry operators.
 CmdLoad: "./HR4435B_XRay_em_bcr3.pdb" loaded as "HR4435B_XRay_em_bcr3".
PyMOL>select selres,all
 Selector: selection "selres" defined with 1148 atoms.
PyMOL>hide everything, all
PyMOL>dss
PyMOL>set stick_transparency,0.6
 Setting: stick_transparency set to 0.60000.
PyMOL>set cartoon_transparency,0.5
 Setting: cartoon_transparency set to 0.50000.
PyMOL>show cartoon, selres
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color blue, all
 Executive: Colored 1148 atoms and 1 object.
PyMOL>set label_color,black
 Setting: label_color set to black.
PyMOL>set label_font_id, 4
 Setting: label_font_id set to 4.
PyMOL>set label_size,3
 Setting: label_size set to 3.00000.
PyMOL>set_color color8, [0,0,255]
 Color: "color8" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color8, resi 8
 Executive: Colored 16 atoms.
PyMOL>set_color color9, [0,0,255]
 Color: "color9" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color9, resi 9
 Executive: Colored 11 atoms.
PyMOL>set_color color10, [0,0,255]
 Color: "color10" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color10, resi 10
 Executive: Colored 16 atoms.
PyMOL>set_color color11, [0,0,255]
 Color: "color11" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color11, resi 11
 Executive: Colored 12 atoms.
PyMOL>set_color color12, [0,0,255]
 Color: "color12" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color12, resi 12
 Executive: Colored 19 atoms.
PyMOL>set_color color13, [0,0,255]
 Color: "color13" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color13, resi 13
 Executive: Colored 14 atoms.
PyMOL>set_color color14, [0,0,255]
 Color: "color14" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color14, resi 14
 Executive: Colored 14 atoms.
PyMOL>set_color color15, [0,0,255]
 Color: "color15" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color15, resi 15
 Executive: Colored 15 atoms.
PyMOL>set_color color16, [0,0,255]
 Color: "color16" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color16, resi 16
 Executive: Colored 17 atoms.
PyMOL>set_color color17, [0,0,255]
 Color: "color17" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color17, resi 17
 Executive: Colored 24 atoms.
PyMOL>set_color color18, [0,0,255]
 Color: "color18" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color18, resi 18
 Executive: Colored 11 atoms.
PyMOL>set_color color19, [0,0,255]
 Color: "color19" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color19, resi 19
 Executive: Colored 16 atoms.
PyMOL>set_color color20, [0,0,255]
 Color: "color20" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color20, resi 20
 Executive: Colored 14 atoms.
PyMOL>set_color color21, [0,0,255]
 Color: "color21" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color21, resi 21
 Executive: Colored 14 atoms.
PyMOL>set_color color22, [0,0,255]
 Color: "color22" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color22, resi 22
 Executive: Colored 16 atoms.
PyMOL>set_color color23, [0,0,255]
 Color: "color23" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color23, resi 23
 Executive: Colored 24 atoms.
PyMOL>set_color color24, [0,0,255]
 Color: "color24" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color24, resi 24
 Executive: Colored 14 atoms.
PyMOL>set_color color25, [0,0,255]
 Color: "color25" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color25, resi 25
 Executive: Colored 10 atoms.
PyMOL>set_color color26, [0,0,255]
 Color: "color26" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color26, resi 26
 Executive: Colored 19 atoms.
PyMOL>set_color color27, [0,0,255]
 Color: "color27" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color27, resi 27
 Executive: Colored 22 atoms.
PyMOL>set_color color28, [0,0,255]
 Color: "color28" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color28, resi 28
 Executive: Colored 12 atoms.
PyMOL>set_color color29, [0,0,255]
 Color: "color29" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color29, resi 29
 Executive: Colored 19 atoms.
PyMOL>set_color color30, [0,0,255]
 Color: "color30" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color30, resi 30
 Executive: Colored 19 atoms.
PyMOL>set_color color31, [0,0,255]
 Color: "color31" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color31, resi 31
 Executive: Colored 22 atoms.
PyMOL>set_color color32, [0,0,255]
 Color: "color32" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color32, resi 32
 Executive: Colored 12 atoms.
PyMOL>set_color color33, [0,0,255]
 Color: "color33" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color33, resi 33
 Executive: Colored 12 atoms.
PyMOL>set_color color34, [0,0,255]
 Color: "color34" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color34, resi 34
 Executive: Colored 14 atoms.
PyMOL>set_color color35, [0,0,255]
 Color: "color35" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color35, resi 35
 Executive: Colored 17 atoms.
PyMOL>set_color color36, [0,0,255]
 Color: "color36" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color36, resi 36
 Executive: Colored 11 atoms.
PyMOL>set_color color37, [0,0,255]
 Color: "color37" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color37, resi 37
 Executive: Colored 11 atoms.
PyMOL>set_color color38, [0,0,255]
 Color: "color38" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color38, resi 38
 Executive: Colored 19 atoms.
PyMOL>set_color color39, [0,0,255]
 Color: "color39" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color39, resi 39
 Executive: Colored 10 atoms.
PyMOL>set_color color40, [0,0,255]
 Color: "color40" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color40, resi 40
 Executive: Colored 22 atoms.
PyMOL>set_color color41, [0,0,255]
 Color: "color41" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color41, resi 41
 Executive: Colored 15 atoms.
PyMOL>set_color color42, [0,0,255]
 Color: "color42" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color42, resi 42
 Executive: Colored 11 atoms.
PyMOL>set_color color43, [0,0,255]
 Color: "color43" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color43, resi 43
 Executive: Colored 14 atoms.
PyMOL>set_color color44, [0,0,255]
 Color: "color44" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color44, resi 44
 Executive: Colored 19 atoms.
PyMOL>set_color color45, [0,0,255]
 Color: "color45" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color45, resi 45
 Executive: Colored 11 atoms.
PyMOL>set_color color46, [0,0,255]
 Color: "color46" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color46, resi 46
 Executive: Colored 17 atoms.
PyMOL>set_color color47, [0,0,255]
 Color: "color47" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color47, resi 47
 Executive: Colored 11 atoms.
PyMOL>set_color color48, [0,0,255]
 Color: "color48" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color48, resi 48
 Executive: Colored 12 atoms.
PyMOL>set_color color49, [0,0,255]
 Color: "color49" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color49, resi 49
 Executive: Colored 19 atoms.
PyMOL>set_color color50, [0,0,255]
 Color: "color50" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color50, resi 50
 Executive: Colored 11 atoms.
PyMOL>set_color color51, [0,0,255]
 Color: "color51" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color51, resi 51
 Executive: Colored 11 atoms.
PyMOL>set_color color52, [0,0,255]
 Color: "color52" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color52, resi 52
 Executive: Colored 19 atoms.
PyMOL>set_color color53, [0,0,255]
 Color: "color53" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color53, resi 53
 Executive: Colored 16 atoms.
PyMOL>set_color color54, [0,0,255]
 Color: "color54" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color54, resi 54
 Executive: Colored 14 atoms.
PyMOL>set_color color55, [0,0,255]
 Color: "color55" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color55, resi 55
 Executive: Colored 11 atoms.
PyMOL>set_color color56, [0,0,255]
 Color: "color56" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color56, resi 56
 Executive: Colored 14 atoms.
PyMOL>set_color color57, [0,0,255]
 Color: "color57" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color57, resi 57
 Executive: Colored 21 atoms.
PyMOL>set_color color58, [0,0,255]
 Color: "color58" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color58, resi 58
 Executive: Colored 21 atoms.
PyMOL>set_color color59, [0,0,255]
 Color: "color59" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color59, resi 59
 Executive: Colored 10 atoms.
PyMOL>set_color color60, [0,0,255]
 Color: "color60" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color60, resi 60
 Executive: Colored 14 atoms.
PyMOL>set_color color61, [0,0,255]
 Color: "color61" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color61, resi 61
 Executive: Colored 16 atoms.
PyMOL>set_color color62, [0,0,255]
 Color: "color62" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color62, resi 62
 Executive: Colored 11 atoms.
PyMOL>set_color color63, [0,0,255]
 Color: "color63" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color63, resi 63
 Executive: Colored 10 atoms.
PyMOL>set_color color64, [0,0,255]
 Color: "color64" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color64, resi 64
 Executive: Colored 10 atoms.
PyMOL>set_color color65, [0,0,255]
 Color: "color65" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color65, resi 65
 Executive: Colored 22 atoms.
PyMOL>set_color color66, [0,0,255]
 Color: "color66" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color66, resi 66
 Executive: Colored 11 atoms.
PyMOL>set_color color67, [0,0,255]
 Color: "color67" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color67, resi 67
 Executive: Colored 17 atoms.
PyMOL>set_color color68, [0,0,255]
 Color: "color68" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color68, resi 68
 Executive: Colored 15 atoms.
PyMOL>set_color color69, [0,0,255]
 Color: "color69" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color69, resi 69
 Executive: Colored 20 atoms.
PyMOL>set_color color70, [0,0,255]
 Color: "color70" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color70, resi 70
 Executive: Colored 7 atoms.
PyMOL>set_color color71, [0,0,255]
 Color: "color71" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color71, resi 71
 Executive: Colored 24 atoms.
PyMOL>set_color color72, [0,0,255]
 Color: "color72" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color72, resi 72
 Executive: Colored 24 atoms.
PyMOL>set_color color73, [0,0,255]
 Color: "color73" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color73, resi 73
 Executive: Colored 21 atoms.
PyMOL>set_color color74, [0,0,255]
 Color: "color74" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color74, resi 74
 Executive: Colored 22 atoms.
PyMOL>set_color color75, [0,0,255]
 Color: "color75" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color75, resi 75
 Executive: Colored 16 atoms.
PyMOL>set_color color76, [0,0,255]
 Color: "color76" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color76, resi 76
 Executive: Colored 20 atoms.
PyMOL>set_color color77, [0,0,255]
 Color: "color77" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color77, resi 77
 Executive: Colored 22 atoms.
PyMOL>set_color color78, [0,0,255]
 Color: "color78" defined as [ 0.000, 0.000, 1.000 ].
PyMOL>color color78, resi 78
 Executive: Colored 22 atoms.
PyMOL>orient
PyMOL>ray 800,800
 Ray: render time: 0.77 sec. = 4687.4 frames/hour (0.77 sec. accum.).
PyMOL>png Richardson_rama.png
 ScenePNG: wrote 800x800 pixel image to file "Richardson_rama.png".
PyMOL>quit