Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    TRANSCRIPTION                           16-JUL-10   3NZL              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA-BINDING PROTEIN     
  > ReadCoordsPdb(): >> TITLE    2 SATB1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM    
  > ReadCoordsPdb(): >> TITLE    3 TARGET HR4435B                                                       
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  1148 ATOM records read from file 
  > ReadCoordsPdb(): -->  1148 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     1148 (372 C, 557 H, 108 O, 106 N, 5 S, 0 Q, 0 Metals)
  > INFO_mol: # residues:      73 (Avg. mol. weight: 115.1)
  > INFO_mol: # -- M.W. :  8402.3 g/mol. (8.40 kD)     Estimated RoG <S2>:  11.23 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 73
  > INFO_mol: Radius of Gyration <S2> :    11.9176  angstroms 
  > INFO_mol: Center of Masses: x_cm(5.398), y_cm(15.325), z_cm(29.315) 

  > INFO_res:  HHSHMLPPEQ WSHTTVRNAL KDLLKDMNQS SLAKECPLSQ SMISSIVNST 
  > INFO_res:  YYANVSAAKC QEFGRWYKHF KKT
  > INFO_res:  
  > INFO_res:  HIS  HIS  SER  HIS  MET  LEU  PRO  PRO  GLU  GLN  TRP  SER  
  > INFO_res:  HIS  THR  THR  VAL  ARG  ASN  ALA  LEU  LYS  ASP  LEU  LEU  
  > INFO_res:  LYS  ASP  MET  ASN  GLN  SER  SER  LEU  ALA  LYS  GLU  CYS  
  > INFO_res:  PRO  LEU  SER  GLN  SER  MET  ILE  SER  SER  ILE  VAL  ASN  
  > INFO_res:  SER  THR  TYR  TYR  ALA  ASN  VAL  SER  ALA  ALA  LYS  CYS  
  > INFO_res:  GLN  GLU  PHE  GLY  ARG  TRP  TYR  LYS  HIS  PHE  LYS  LYS  
  > INFO_res:  THR  
  > INFO_res:  
  > INFO_res:   5 ALA     2 ARG     4 ASN     2 ASP     2 CYS     4 GLN  
  > INFO_res:   3 GLU     1 GLY     5 HIS     2 ILE     6 LEU     7 LYS  
  > INFO_res:   3 MET     2 PHE     3 PRO    10 SER     4 THR     3 TYR  
  > INFO_res:   2 TRP     3 VAL  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** monomer, 1 [1] chains *** 


PdbStat> PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 11 -- 70)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 33 -- 429)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 48 -- 643)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 11 -- 70)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 33 -- 429)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 48 -- 643)

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 11 -- 70)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 33 -- 429)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 48 -- 643)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 11 -- 70)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 33 -- 429)
PdbStat>  **WARNING**: Wrong # of atoms found, HGs ignored for (MET 48 -- 643)

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...