read coor pdb HR4435B_R3_em_bcr3.pdb
all
rmsd coor heavy 11A-13A,18A-54A,61A-77A
ave
resOrd_rmsd_heavy
rmsd coor backbone 11A-13A,18A-54A,61A-77A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit