Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    LIGASE                                  13-OCT-08   3EVX              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE HUMAN E2-LIKE UBIQUITIN-FOLD                 
  > ReadCoordsPdb(): >> TITLE    2 MODIFIER CONJUGATING ENZYME 1 (UFC1). NORTHEAST STRUCTURAL           
  > ReadCoordsPdb(): >> TITLE    3 GENOMICS CONSORTIUM TARGET HR41                                      
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->  5208 ATOM records read from file 
  > ReadCoordsPdb(): -->  5208 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:     5208 (3368 C, 0 H, 912 O, 904 N, 8 S, 0 Q, 16 Metals)
  > INFO_mol: # residues:     632 (Avg. mol. weight: 109.0)
  > INFO_mol: # -- M.W. : 68915.6 g/mol. (68.92 kD)     Estimated RoG <S2>:  25.51 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 632
  > INFO_mol: Radius of Gyration <S2> :    29.5596  angstroms 
  > INFO_mol: Center of Masses: x_cm(3.004), y_cm(10.101), z_cm(-13.468) 

  > INFO_res:  ATRRVVSEIP VLKTNAGPRD RELWVQRLKE EYQSLIRYVE NNKNADNDWF 
  > INFO_res:  RLESNKEGTR WFGKCWYIHD LLKYEFDIEF DIPITYPTTA PEIAVPELDG 
  > INFO_res:  KTAKYRGGKI CLTDHFKPLW ARNVPKFGLA HLALGLGPWL AVEIPDLIQK 
  > INFO_res:  GVIQHKATRR VVSEIPVLKT NAGPRDRELW VQRLKEEYQS LIRYVENNKN 
  > INFO_res:  ADNDWFRLES NKEGTRWFGK CWYIHDLLKY EFDIEFDIPI TYPTTAPEIA 
  > INFO_res:  VPELDGKTAK YRGGKICLTD HFKPLWARNV PKFGLAHLAL GLGPWLAVEI 
  > INFO_res:  PDLIQKGVIQ HKATRRVVSE IPVLKTNAGP RDRELWVQRL KEEYQSLIRY 
  > INFO_res:  VENNKNADND WFRLESNKEG TRWFGKCWYI HDLLKYEFDI EFDIPITYPT 
  > INFO_res:  TAPEIAVPEL DGKTAKYRGG KICLTDHFKP LWARNVPKFG LAHLALGLGP 
  > INFO_res:  WLAVEIPDLI QKGVIQHKAT RRVVSEIPVL KTNAGPRDRE LWVQRLKEEY 
  > INFO_res:  QSLIRYVENN KNADNDWFRL ESNKEGTRWF GKCWYIHDLL KYEFDIEFDI 
  > INFO_res:  PITYPTTAPE IAVPELDGKT AKYRGGKICL TDHFKPLWAR NVPKFGLAHL 
  > INFO_res:  ALGLGPWLAV EIPDLIQKGV IQHK
  > INFO_res:  
  > INFO_res:  ALA  THR  ARG  ARG  VAL  VAL  SER  GLU  ILE  PRO  VAL  LEU  
  > INFO_res:  LYS  THR  ASN  ALA  GLY  PRO  ARG  ASP  ARG  GLU  LEU  TRP  
  > INFO_res:  VAL  GLN  ARG  LEU  LYS  GLU  GLU  TYR  GLN  SER  LEU  ILE  
  > INFO_res:  ARG  TYR  VAL  GLU  ASN  ASN  LYS  ASN  ALA  ASP  ASN  ASP  
  > INFO_res:  TRP  PHE  ARG  LEU  GLU  SER  ASN  LYS  GLU  GLY  THR  ARG  
  > INFO_res:  TRP  PHE  GLY  LYS  CYS  TRP  TYR  ILE  HIS  ASP  LEU  LEU  
  > INFO_res:  LYS  TYR  GLU  PHE  ASP  ILE  GLU  PHE  ASP  ILE  PRO  ILE  
  > INFO_res:  THR  TYR  PRO  THR  THR  ALA  PRO  GLU  ILE  ALA  VAL  PRO  
  > INFO_res:  GLU  LEU  ASP  GLY  LYS  THR  ALA  LYS  MSE  TYR  ARG  GLY  
  > INFO_res:  GLY  LYS  ILE  CYS  LEU  THR  ASP  HIS  PHE  LYS  PRO  LEU  
  > INFO_res:  TRP  ALA  ARG  ASN  VAL  PRO  LYS  PHE  GLY  LEU  ALA  HIS  
  > INFO_res:  LEU  MSE  ALA  LEU  GLY  LEU  GLY  PRO  TRP  LEU  ALA  VAL  
  > INFO_res:  GLU  ILE  PRO  ASP  LEU  ILE  GLN  LYS  GLY  VAL  ILE  GLN  
  > INFO_res:  HIS  LYS  ALA  THR  ARG  ARG  VAL  VAL  SER  GLU  ILE  PRO  
  > INFO_res:  VAL  LEU  LYS  THR  ASN  ALA  GLY  PRO  ARG  ASP  ARG  GLU  
  > INFO_res:  LEU  TRP  VAL  GLN  ARG  LEU  LYS  GLU  GLU  TYR  GLN  SER  
  > INFO_res:  LEU  ILE  ARG  TYR  VAL  GLU  ASN  ASN  LYS  ASN  ALA  ASP  
  > INFO_res:  ASN  ASP  TRP  PHE  ARG  LEU  GLU  SER  ASN  LYS  GLU  GLY  
  > INFO_res:  THR  ARG  TRP  PHE  GLY  LYS  CYS  TRP  TYR  ILE  HIS  ASP  
  > INFO_res:  LEU  LEU  LYS  TYR  GLU  PHE  ASP  ILE  GLU  PHE  ASP  ILE  
  > INFO_res:  PRO  ILE  THR  TYR  PRO  THR  THR  ALA  PRO  GLU  ILE  ALA  
  > INFO_res:  VAL  PRO  GLU  LEU  ASP  GLY  LYS  THR  ALA  LYS  MSE  TYR  
  > INFO_res:  ARG  GLY  GLY  LYS  ILE  CYS  LEU  THR  ASP  HIS  PHE  LYS  
  > INFO_res:  PRO  LEU  TRP  ALA  ARG  ASN  VAL  PRO  LYS  PHE  GLY  LEU  
  > INFO_res:  ALA  HIS  LEU  MSE  ALA  LEU  GLY  LEU  GLY  PRO  TRP  LEU  
  > INFO_res:  ALA  VAL  GLU  ILE  PRO  ASP  LEU  ILE  GLN  LYS  GLY  VAL  
  > INFO_res:  ILE  GLN  HIS  LYS  ALA  THR  ARG  ARG  VAL  VAL  SER  GLU  
  > INFO_res:  ILE  PRO  VAL  LEU  LYS  THR  ASN  ALA  GLY  PRO  ARG  ASP  
  > INFO_res:  ARG  GLU  LEU  TRP  VAL  GLN  ARG  LEU  LYS  GLU  GLU  TYR  
  > INFO_res:  GLN  SER  LEU  ILE  ARG  TYR  VAL  GLU  ASN  ASN  LYS  ASN  
  > INFO_res:  ALA  ASP  ASN  ASP  TRP  PHE  ARG  LEU  GLU  SER  ASN  LYS  
  > INFO_res:  GLU  GLY  THR  ARG  TRP  PHE  GLY  LYS  CYS  TRP  TYR  ILE  
  > INFO_res:  HIS  ASP  LEU  LEU  LYS  TYR  GLU  PHE  ASP  ILE  GLU  PHE  
  > INFO_res:  ASP  ILE  PRO  ILE  THR  TYR  PRO  THR  THR  ALA  PRO  GLU  
  > INFO_res:  ILE  ALA  VAL  PRO  GLU  LEU  ASP  GLY  LYS  THR  ALA  LYS  
  > INFO_res:  MSE  TYR  ARG  GLY  GLY  LYS  ILE  CYS  LEU  THR  ASP  HIS  
  > INFO_res:  PHE  LYS  PRO  LEU  TRP  ALA  ARG  ASN  VAL  PRO  LYS  PHE  
  > INFO_res:  GLY  LEU  ALA  HIS  LEU  MSE  ALA  LEU  GLY  LEU  GLY  PRO  
  > INFO_res:  TRP  LEU  ALA  VAL  GLU  ILE  PRO  ASP  LEU  ILE  GLN  LYS  
  > INFO_res:  GLY  VAL  ILE  GLN  HIS  LYS  ALA  THR  ARG  ARG  VAL  VAL  
  > INFO_res:  SER  GLU  ILE  PRO  VAL  LEU  LYS  THR  ASN  ALA  GLY  PRO  
  > INFO_res:  ARG  ASP  ARG  GLU  LEU  TRP  VAL  GLN  ARG  LEU  LYS  GLU  
  > INFO_res:  GLU  TYR  GLN  SER  LEU  ILE  ARG  TYR  VAL  GLU  ASN  ASN  
  > INFO_res:  LYS  ASN  ALA  ASP  ASN  ASP  TRP  PHE  ARG  LEU  GLU  SER  
  > INFO_res:  ASN  LYS  GLU  GLY  THR  ARG  TRP  PHE  GLY  LYS  CYS  TRP  
  > INFO_res:  TYR  ILE  HIS  ASP  LEU  LEU  LYS  TYR  GLU  PHE  ASP  ILE  
  > INFO_res:  GLU  PHE  ASP  ILE  PRO  ILE  THR  TYR  PRO  THR  THR  ALA  
  > INFO_res:  PRO  GLU  ILE  ALA  VAL  PRO  GLU  LEU  ASP  GLY  LYS  THR  
  > INFO_res:  ALA  LYS  MSE  TYR  ARG  GLY  GLY  LYS  ILE  CYS  LEU  THR  
  > INFO_res:  ASP  HIS  PHE  LYS  PRO  LEU  TRP  ALA  ARG  ASN  VAL  PRO  
  > INFO_res:  LYS  PHE  GLY  LEU  ALA  HIS  LEU  MSE  ALA  LEU  GLY  LEU  
  > INFO_res:  GLY  PRO  TRP  LEU  ALA  VAL  GLU  ILE  PRO  ASP  LEU  ILE  
  > INFO_res:  GLN  LYS  GLY  VAL  ILE  GLN  HIS  LYS  
  > INFO_res:  
  > INFO_res:  40 ALA    40 ARG    28 ASN    36 ASP     8 CYS    16 GLN  
  > INFO_res:  48 GLU    40 GLY    16 HIS    44 ILE    64 LEU    52 LYS  
  > INFO_res:  24 PHE    40 PRO    12 SER    32 THR    24 TYR    24 TRP  
  > INFO_res:  36 VAL     8 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** x-mer, 4 [4] chains 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...