read coor pdb HR41_R3_em_bcr3.pdb
all
rmsd coor heavy 4A-17A,22A-73A,76A-97A,100A-102A,119A-131A,133A-159A
ave
resOrd_rmsd_heavy
rmsd coor backbone 4A-17A,22A-73A,76A-97A,100A-102A,119A-131A,133A-159A
ave
resOrd_rmsd_bb
write
best.pdb
coor
all
all
pdb
quit