PyMOL>load ./HR3646E_XRay_em_bcr3_noHs_H.pdb,obj
HEADER    PROTEIN BINDING                         11-DEC-08   3FIA
TITLE     CRYSTAL STRUCTURE OF THE EH 1 DOMAIN FROM HUMAN INTERSECTIN-
TITLE    2 1 PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET
TITLE    3 HR3646E.
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: INTERSECTIN-1;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: RESIDUES 1-111;
COMPND   5 SYNONYM: SH3 DOMAIN-CONTAINING PROTEIN 1A, SH3P17;
COMPND   6 ENGINEERED: YES;
COMPND   7 MUTATION: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 4 symmetry operators.
 CmdLoad: "./HR3646E_XRay_em_bcr3_noHs_H.pdb" loaded as "obj".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color red, ss h
 Executive: Colored 955 atoms.
PyMOL>color cyan,ss s
 Executive: Colored 54 atoms.
PyMOL>color gray,ss ""+l
 Executive: Colored 453 atoms.
PyMOL>set cartoon_highlight_color,yellow
 Setting: cartoon_highlight_color set to yellow.
PyMOL>orient
PyMOL>set ray_trace_mode, 3
 Setting: ray_trace_mode set to 3.
PyMOL>set antialias, 2
 Setting: antialias set to 2.
PyMOL>ray 600,600
 Ray: render time: 1.41 sec. = 2548.9 frames/hour (1.41 sec. accum.).
PyMOL>png molecule.png
 ScenePNG: wrote 600x600 pixel image to file "molecule.png".
PyMOL>set stereo,1
 Setting: stereo set to on.
PyMOL>stereo walleye
 Setting: stereo_mode set to 3.
PyMOL>select bb,n. c+ca+n
 Selector: selection "bb" defined with 282 atoms.
PyMOL>hide everything,all
PyMOL>show lines,bb
PyMOL>color blue,bb
 Executive: Colored 282 atoms.
PyMOL>set line_width,2
 Setting: line_width set to 2.00000.
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>zoom complete=1
PyMOL>set ray_trace_mode, 0
 Setting: ray_trace_mode set to 0.
PyMOL>ray 1200,600
 Ray: render time: 0.60 sec. = 6007.9 frames/hour (2.01 sec. accum.).
PyMOL>png stereo.png
 ScenePNG: wrote 1200x600 pixel image to file "stereo.png".
PyMOL>quit