Running PDBSTAT from Linux 
  Ayuda is on: /farm/software/PdbStat/PdbStat-5.7

  (C)
  (C)  Pdbstat -- A program to evaluate some statistics of macromolecules,
  (C)             given the cartesian coordinates.
  (C)
  (C)  (c) Copyright 1992-2012 Roberto Tejero and Gaetano T. Montelione
  (C)      Center for Advanced Technology and Medicine (CABM)
  (C)      Rutgers University
  (C)
       ** VERSION:  5.7-exp dom mar 10 23:17:04 UTC 2013  ** 
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 
       ===============>  W E L C O M E  to PDBStat <================   
 PDBStat has become a tool able (between other things) of:
    a) read and interconvert between DISMAN, DYANA, PDB, DISCOVER, IMPACT 
    b) elaborate some info about the molecule as MW, Radius of gyration, .. 
    c) investigate the setereochemical quality of a protein by evaluating 
       phi, psi, chi1, impropers and chirality 
 The sequence of acts should be: 
       1.- read a file (coords, constr) 
       2.- read a sequence file (can be free format) 
       3.- Follow menu (calculating, writing ...) 

   NOTE: Be aware that if you read in a constraint file you 
         *ALWAYS* need to read a sequence file also

 HAVE FUN AND ENJOY !!
 **** For more info type `help' or `menu' **** 

  --> ... Reading/Loading Distances file  ...  125 distance records read
  --> ... Reading/Loading Dihedral Library .. 1119 library records read

PdbStat> [rea]d [hel]p [his]tory [men]u [phi] [qui]t...

PdbStat>  leyendo PDB 
  > locate_file(): file `temp_bcm_111.pdb' opened for reading 
  > ReadCoordsPdb(): >> HEADER    PROTEIN BINDING                         11-DEC-08   3FIA              
  > ReadCoordsPdb(): >> TITLE     CRYSTAL STRUCTURE OF THE EH 1 DOMAIN FROM HUMAN INTERSECTIN-          
  > ReadCoordsPdb(): >> TITLE    2 1 PROTEIN. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET           
  > ReadCoordsPdb(): >> TITLE    3 HR3646E.                                                             
  > ReadCoordsPdb(): >> COMPND    MOL_ID: 1;                                                            
   1  > ReadCoordsPdb(): After scanning there is(are) 1 model(s) 

 ReadCoordsPdb(): record with alternate data 'ATOM    554  N  BVAL A  76', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    556  CA BVAL A  76', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    558  C  BVAL A  76', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    560  O  BVAL A  76', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    562  CB BVAL A  76', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    564  CG1BVAL A  76', discarding it
 ReadCoordsPdb(): record with alternate data 'ATOM    566  CG2BVAL A  76', discarding it
  > ReadCoordsPdb(): *** SUMMARY ***
  > ReadCoordsPdb(): -->   771 ATOM records read from file 
  > ReadCoordsPdb(): -->   771 Regular IUPAC Atoms 
  > ReadCoordsPdb(): -->     0 Pseudo-atoms (DISMAN type) 
  > ReadCoordsPdb(): -->     0 Lone pairs
  > ReadCoordsPdb(): Bye ... 
  > =============================== INFO ================================ 
  > INFO_mol: # atoms:      771 (494 C, 0 H, 138 O, 131 N, 0 S, 0 Q, 8 Metals)
  > INFO_mol: # residues:      98 (Avg. mol. weight: 106.7)
  > INFO_mol: # -- M.W. : 10452.3 g/mol. (10.45 kD)     Estimated RoG <S2>:  12.56 
  > INFO_mol: CenterMass() -- Working PDB model 1 in file, model no. 1 
  > INFO_mol: CenterMass() -- Molecule `temp_bcm_111.pdb' model #1, TOTAL RESIDUES: 98
  > INFO_mol: Radius of Gyration <S2> :    12.8358  angstroms 
  > INFO_mol: Center of Masses: x_cm(23.981), y_cm(15.485), z_cm(26.848) 

  > INFO_res:  TPFGGSLDTW AITVEERAKH DQQFHSLKPI SGFITGDQAR NFFFQSGLPQ 
  > INFO_res:  PVLAQIWALA DNNDGRDQVE FSIAKLIKLK LQGYQLPSAL PPVK
  > INFO_res:  
  > INFO_res:  THR  PRO  PHE  GLY  GLY  SER  LEU  ASP  THR  TRP  ALA  ILE  
  > INFO_res:  THR  VAL  GLU  GLU  ARG  ALA  LYS  HIS  ASP  GLN  GLN  PHE  
  > INFO_res:  HIS  SER  LEU  LYS  PRO  ILE  SER  GLY  PHE  ILE  THR  GLY  
  > INFO_res:  ASP  GLN  ALA  ARG  ASN  PHE  PHE  PHE  GLN  SER  GLY  LEU  
  > INFO_res:  PRO  GLN  PRO  VAL  LEU  ALA  GLN  ILE  TRP  ALA  LEU  ALA  
  > INFO_res:  ASP  MSE  ASN  ASN  ASP  GLY  ARG  MSE  ASP  GLN  VAL  GLU  
  > INFO_res:  PHE  SER  ILE  ALA  MSE  LYS  LEU  ILE  LYS  LEU  LYS  LEU  
  > INFO_res:  GLN  GLY  TYR  GLN  LEU  PRO  SER  ALA  LEU  PRO  PRO  VAL  
  > INFO_res:  MSE  LYS  
  > INFO_res:  
  > INFO_res:   8 ALA     3 ARG     3 ASN     6 ASP     9 GLN     3 GLU  
  > INFO_res:   7 GLY     2 HIS     6 ILE    10 LEU     6 LYS     7 PHE  
  > INFO_res:   7 PRO     6 SER     4 THR     1 TYR     2 TRP     4 VAL  
  > INFO_res:   4 MSE  
  > INFO_res: DISULFIDE: ** NO INFO FOR DISULFIDES IN FILE 
  > ===================================================================== 
  > ReadCoordsPdb():  *** monomer, 1 [1] chains *** 


PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> PdbStat>  ** Model with _NO_ hydrogens, nothing to fix

PdbStat> 
  > WRITER: Output file name ?:_    > WRITER: Coords, constraints, aco or sequence file? :_    > WRITER: ... backbone, heavy, full set? (back/heavy/all/select):   > COORD_writer: Format  (pdb/congen/RasMol) ? :   > COORD_writer: * ---- Wrong typing BUDDY !! ----- *
  > COORD_writer: * Option NOT recognized, type again please *
  > COORD_writer: Format  (pdb/congen/RasMol) ? : 
PdbStat> 
PdbStat>  *END* of program detected, BYE! ...