Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total1571
intra-residue [i = j]333
sequential [| i - j | = 1]481
medium range [1 < | i - j | < 5]425
long range [| i - j | ≥ 5]332
NOE constraints per restrained residue b14.7
Dihedral-angle constraints:399
Total number of restricting constraints b1970
Total number of restricting constraints per restrained residue b18.4
Restricting long-range constraints per restrained residue b3.1
Total structures computedcurrently unknown
Number of structures used18
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å13.17
0.2 - 0.5 Å7.78
> 0.5 Å3.06
RMS of distance violation / constraint0.04 Å
Maximum distance violation d1.19 Å
Dihedral angle violations / structure
1 - 10 °1.28
> 10 °1
RMS of dihedral angle violation / constraint0.98 °
Maximum dihedral angle violation d30.00 °
RPF scores
RecallPrecisionF-measureDP-score
0.9470.9370.9420.688
RMSD Values
allorderedeSelectedf
All backbone atoms8.4 Å0.7 Å0.7 Å
All heavy atoms8.6 Å1.0 Å1.0 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)0.36N/A1.73
Procheck G-factor e (all dihedral angles)0.34N/A2.01
Verify3D0.340.0401-1.93
ProsaII (-ve)0.650.07540.00
MolProbity clashscore6.721.75490.37
General linear model RMSD prediction1.40
Ramachandran Plot Summary from Procheck f
Most favoured regions92.6%
Additionally allowed regions7.4%
Generously allowed regions0.1%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions98.3%
Allowed regions1.7%
Disallowed regions0%


a Analysed for residues 1 to 121
b There are 107 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 24A-44A,48A-82A,84A-102A,105A-113A
f Residues selected based on: User defined residues

Selected residue ranges: 24A-44A,48A-82A,84A-102A,105A-113A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4