PyMOL>load ./HR3102A_XRay_em_bcr3_noHs_H.pdb,obj
HEADER    PROTEIN BINDING                         30-NOV-09   3KW6
TITLE     CRYSTAL STRUCTURE OF A DOMAIN OF 26S PROTEASOME REGULATORY
TITLE    2 SUBUNIT 8 FROM HOMO SAPIENS. NORTHEAST STRUCTURAL GENOMICS
TITLE    3 CONSORTIUM TARGET ID HR3102A
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: 26S PROTEASE REGULATORY SUBUNIT 8;
COMPND   3 CHAIN: A;
COMPND   4 FRAGMENT: SEQUENCE DATABASE RESIDUES 318-395;
COMPND   5 SYNONYM: PROTEASOME 26S SUBUNIT ATPASE 5, PROTEASOME
COMPND   6 SUBUNIT P45, P45/SUG, THYROID HORMONE RECEPTOR-INTERACTING
COMPND   7 PROTEIN 1, TRIP1;
COMPND   8 ENGINEERED: YES
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 6 symmetry operators.
 CmdLoad: "./HR3102A_XRay_em_bcr3_noHs_H.pdb" loaded as "obj".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color red, ss h
 Executive: Colored 771 atoms.
PyMOL>color cyan,ss s
 Executive: Colored 59 atoms.
PyMOL>color gray,ss ""+l
 Executive: Colored 243 atoms.
PyMOL>set cartoon_highlight_color,yellow
 Setting: cartoon_highlight_color set to yellow.
PyMOL>orient
PyMOL>set ray_trace_mode, 3
 Setting: ray_trace_mode set to 3.
PyMOL>set antialias, 2
 Setting: antialias set to 2.
PyMOL>ray 600,600
 Ray: render time: 1.25 sec. = 2871.7 frames/hour (1.25 sec. accum.).
PyMOL>png molecule.png
 ScenePNG: wrote 600x600 pixel image to file "molecule.png".
PyMOL>set stereo,1
 Setting: stereo set to on.
PyMOL>stereo walleye
 Setting: stereo_mode set to 3.
PyMOL>select bb,n. c+ca+n
 Selector: selection "bb" defined with 210 atoms.
PyMOL>hide everything,all
PyMOL>show lines,bb
PyMOL>color blue,bb
 Executive: Colored 210 atoms.
PyMOL>set line_width,2
 Setting: line_width set to 2.00000.
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>zoom complete=1
PyMOL>set ray_trace_mode, 0
 Setting: ray_trace_mode set to 0.
PyMOL>ray 1200,600
 Ray: render time: 0.55 sec. = 6545.2 frames/hour (1.80 sec. accum.).
PyMOL>png stereo.png
 ScenePNG: wrote 1200x600 pixel image to file "stereo.png".
PyMOL>quit