Summary of conformationally-restricting constraints and structure quality factors



Analyses performed for user defined residues.


Summary of conformationally-restricting experimental constraints a
NOE-based distance constraints:
Total2302
intra-residue [i = j]462
sequential [| i - j | = 1]508
medium range [1 < | i - j | < 5]707
long range [| i - j | ≥ 5]625
NOE constraints per restrained residue b29.9
Hydrogen bond constraints:
Total34
long range [| i - j | ≥ 5]0
Dihedral-angle constraints:97
Total number of restricting constraints b2433
Total number of restricting constraints per restrained residue b31.6
Restricting long-range constraints per restrained residue b8.1
Total structures computedcurrently unknown
Number of structures used20
Residual constraint violations a,c
Distance violations / structure
0.1 - 0.2 Å1.05
0.2 - 0.5 Å0.05
> 0.5 Å0
RMS of distance violation / constraint0.00 Å
Maximum distance violation d0.25 Å
Dihedral angle violations / structure
1 - 10 °1.35
> 10 °0
RMS of dihedral angle violation / constraint0.22 °
Maximum dihedral angle violation d3.10 °
RMSD Values
allorderedeSelectedf
All backbone atoms2.7 Å0.5 Å0.5 Å
All heavy atoms3.1 Å0.9 Å0.9 Å
Structure Quality Factors - overall statistics
Mean scoreSDZ-score g
Procheck G-factor e (phi / psi only)0.28N/A1.42
Procheck G-factor e (all dihedral angles)0.27N/A1.60
Verify3D0.330.0150-2.09
ProsaII (-ve)0.730.04870.33
MolProbity clashscore15.462.7873-1.13
Ramachandran Plot Summary from Procheck f
Most favoured regions92.0%
Additionally allowed regions7.9%
Generously allowed regions0.1%
Disallowed regions0.0%
Ramachandran Plot Statistics from Richardson's lab
Most favoured regions98.1%
Allowed regions1.9%
Disallowed regions0%


a Analysed for residues 1 to 86
b There are 77 residues with conformationally restricting constraints
c Calculated for all constraints for the given residues, using sum over r^-6
d Largest constraint violation among all the reported structures
e Residues with sum of phi and psi order parameters > 1.8

Ordered residue ranges: 11A-30A,33A-42A,46A-83A
f Residues selected based on: User defined residues

Selected residue ranges: 11A-30A,33A-42A,46A-83A

g With respect to mean and standard deviation for for a set of 252 X-ray structures < 500 residues, of resolution <= 1.80 Å, R-factor <= 0.25 and R-free <= 0.28; a positive value indicates a 'better' score

Generated using PSVS 1.4