PyMOL>load ./HR1958_XRay_em_bcr3_noHs_H.pdb,obj
HEADER    CELL CYCLE                              29-JUN-04   1TVG
TITLE     X-RAY STRUCTURE OF HUMAN PP25 GENE PRODUCT, HSPC034.
TITLE    2 NORTHEAST STRUCTURAL GENOMICS TARGET HR1958.
COMPND    MOL_ID: 1;
COMPND   2 MOLECULE: LOC51668 PROTEIN;
COMPND   3 CHAIN: A;
COMPND   4 SYNONYM: ANAPHASE-PROMOTING COMPLEX, SUBUNIT 10 (APC10),
COMPND   5 HR1958;
COMPND   6 ENGINEERED: YES;
COMPND   7 OTHER_DETAILS: THIS PROTEIN IS PROBABLY A MUTANT BECAUSE
COMPND   8 ASP109 IS DELETED.
 ObjectMolecule: Read secondary structure assignments.
 ObjectMolecule: Read crystal symmetry information.
 Symmetry: Found 4 symmetry operators.
 CmdLoad: "./HR1958_XRay_em_bcr3_noHs_H.pdb" loaded as "obj".
PyMOL>hide everything, all
PyMOL>dss
PyMOL>show cartoon, all
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>color red, ss h
 Executive: Colored 222 atoms.
PyMOL>color cyan,ss s
 Executive: Colored 1178 atoms.
PyMOL>color gray,ss ""+l
 Executive: Colored 722 atoms.
PyMOL>set cartoon_highlight_color,yellow
 Setting: cartoon_highlight_color set to yellow.
PyMOL>orient
PyMOL>set ray_trace_mode, 3
 Setting: ray_trace_mode set to 3.
PyMOL>set antialias, 2
 Setting: antialias set to 2.
PyMOL>ray 600,600
 Ray: render time: 1.64 sec. = 2196.3 frames/hour (1.64 sec. accum.).
PyMOL>png molecule.png
 ScenePNG: wrote 600x600 pixel image to file "molecule.png".
PyMOL>set stereo,1
 Setting: stereo set to on.
PyMOL>stereo walleye
 Setting: stereo_mode set to 3.
PyMOL>select bb,n. c+ca+n
 Selector: selection "bb" defined with 408 atoms.
PyMOL>hide everything,all
PyMOL>show lines,bb
PyMOL>color blue,bb
 Executive: Colored 408 atoms.
PyMOL>set line_width,2
 Setting: line_width set to 2.00000.
PyMOL>set bg_rgb, [1,1,1]
 Setting: bg_rgb set to [ 1.00000, 1.00000, 1.00000 ].
PyMOL>zoom complete=1
PyMOL>set ray_trace_mode, 0
 Setting: ray_trace_mode set to 0.
PyMOL>ray 1200,600
 Ray: render time: 0.84 sec. = 4304.1 frames/hour (2.48 sec. accum.).
PyMOL>png stereo.png
 ScenePNG: wrote 1200x600 pixel image to file "stereo.png".
PyMOL>quit