PROCHECK-NMR. PROCHECK v.3.5.4 (Feb 2001) ----------------------------------------- Coordinates file: [ HR1958_R3Cons_em_bcr3.pdb ] Ranges file: [ HR1958_R3Cons_em_bcr3.ressel ] Program directory: /farm/software/procheck/ Running clean-up on file: HR1958_R3Cons_em_bcr3.pdb ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 TYR A 113 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 TYR A 67 PHE A 68 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 TYR A 113 PHE A 122 * PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 TYR A 67 PHE A 68 PHE A 85 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 TYR A 67 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 45 PHE A 49 PHE A 53 PHE A 68 TYR A 113 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 TYR A 67 PHE A 68 PHE A 85 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 TYR A 67 PHE A 85 PHE A 122 * PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 TYR A 67 PHE A 68 PHE A 122 * PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 49 PHE A 53 PHE A 68 PHE A 122 PHE A 125 ** Unrecognized atom type [ O2 ] in residue SER A 143 * Side chain atoms should be swapped for the following residues: * As this is an NMR ensemble the swap has not been made * PHE A 38 PHE A 45 PHE A 53 TYR A 67 PHE A 68 PHE A 125 * NMR ensemble comprises 18 model structures * Program completed ................................................................. Secondary structure assignment * NMR ensemble comprises 18 model structures * Program completed .................................................................. RMS deviations for ensemble * Program completed .................................................................. Phi-psi and chi1-chi2 distributions * * * Model and residue ranges selected in file: HR1958_R3Cons_em_bcr3.ressel * ------------------------------------------ * * ALL models in the ensemble * * From residue 4 in chain [A] to residue 16 in chain [A] * From residue 19 in chain [A] to residue 30 in chain [A] * From residue 33 in chain [A] to residue 67 in chain [A] * From residue 70 in chain [A] to residue 139 in chain [A] * Main Ramachandran plot * File: HR1958_R3Cons_em_bcr3_01_ramachand.ps All-residue Ramachandran plots * File: HR1958_R3Cons_em_bcr3_02_allramach.ps All-residue chi1-chi2 plots * File: HR1958_R3Cons_em_bcr3_03_chi1_chi2.ps * Program complete .................................................................. Dihedral angle distributions and quality plots * * * Model and residue ranges selected in file: HR1958_R3Cons_em_bcr3.ressel * ------------------------------------------ * * ALL models in the ensemble * * From residue 4 in chain [A] to residue 16 in chain [A] * From residue 19 in chain [A] to residue 30 in chain [A] * From residue 33 in chain [A] to residue 67 in chain [A] * From residue 70 in chain [A] to residue 139 in chain [A] * **** No torsion angle restraints found Phi angle distributions * File: HR1958_R3Cons_em_bcr3_04_phidistrb.ps Psi angle distributions * File: HR1958_R3Cons_em_bcr3_05_psidistrb.ps Chi-1 angle distributions * File: HR1958_R3Cons_em_bcr3_06_ch1distrb.ps Chi-2 angle distributions * File: HR1958_R3Cons_em_bcr3_07_ch2distrb.ps Ensemble Ramachandran plots * File: HR1958_R3Cons_em_bcr3_08_ensramach.ps Ensemble chi1-chi2 plots * File: HR1958_R3Cons_em_bcr3_09_ensch1ch2.ps Residue properties plot * File: HR1958_R3Cons_em_bcr3_10_residprop.ps Model secondary structures * File: HR1958_R3Cons_em_bcr3_11_modelsecs.ps .................................................................. Restraints and restraint violation plots * * * Model and residue ranges selected in file: HR1958_R3Cons_em_bcr3.ressel * ------------------------------------------ * * ALL models in the ensemble * * From residue 4 in chain [A] to residue 16 in chain [A] * From residue 19 in chain [A] to residue 30 in chain [A] * From residue 33 in chain [A] to residue 67 in chain [A] * From residue 70 in chain [A] to residue 139 in chain [A] * * * Restraints read in from file: * HR1958_R3Cons_em_bcr3.nrv * Warning. Restraints file not found: * Number of restraints read in: 0 * * Restraints read in from file: * HR1958_R3Cons_em_bcr3.hrv * Warning. Restraints file not found: * Number of restraints read in: 0 * * Restraints read in from file: * HR1958_R3Cons_em_bcr3.srv * Warning. Restraints file not found: * Number of restraints read in: 0 * * Total number of restraints read in: 0 * **** No distance restraints found **** No torsion angle restraints found * **** No restraints found, so no restraint plots will be produced ..................................................................